Resource

Id Histone_ChIP-seq/ENCSR917QEHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR917QEH [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR917QEH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-15T20:26:40.616927+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR917QEH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment: As of January 23, 2018, this experiment has been rerun to correct for use of proper controls.
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR917QEH float

Histone_ChIP-seq_ENCSR917QEH
Histone_ChIP-seq ENCSR917QEH [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR917QEH [1.39, 24.6]
n
36,954,494
mean
5.86
sd
2.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 369544941.15% 54685
chr1 3684931 1.48% 5318
chr2 2785854 1.15% 4240
chr3 2337761 1.18% 3496
chr4 1374021 0.72% 2177
chr5 1859267 1.02% 2739
chr6 2163995 1.27% 3172
chr7 1840959 1.16% 2733
chr8 1442435 0.99% 2236
chr9 1605876 1.16% 2393
chr10 1699551 1.27% 2527
chr11 2103035 1.56% 2999
chr12 2240962 1.68% 3197
chr13 732580 0.64% 1168
chr14 1076884 1.01% 1606
chr15 1221722 1.20% 1839
chr16 1346909 1.49% 1963
chr17 2130370 2.56% 2991
chr18 560852 0.70% 928
chr19 2029853 3.46% 2849
chr20 982252 1.52% 1480
chr21 377887 0.81% 558
chr22 849736 1.67% 1217
chrX 488924 0.31% 830
chrY 17878 0.03% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54685 195 19595 675.77 479
global segment-length histogram

Files

Filename Size md5
ENCFF731TOU.bed.gz 1.09 MB 6dcef1c7be27f9b8c6755b6780d4301c
ENCFF731TOU.tabix.bed.gz 564.09 KB 12c42b45432ac80a30e2a2f02ceb5b89
ENCFF731TOU.tabix.bed.gz.tbi 196.54 KB b18231d3a8b580afceeaec4ec62acb45
genomic_resource.yaml 2.04 KB dc976137260939999da5aff6a772f6be
statistics/