Resource
| Id | Histone_ChIP-seq/ENCSR914QOK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR914QOK [biosample_summary="Homo sapiens SK-N-SH" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN360NCR|/analyses/ENCAN360NCR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF690PRE|/files/ENCFF690PRE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12093615 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF897EXE|/files/ENCFF897EXE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27982660 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR914QOK | float |
Histone_ChIP-seq_ENCSR914QOK |
Histone_ChIP-seq ENCSR914QOK [biosample_summary="Homo sapiens SK-N-SH" and target="H3K27me3"]
|
 |
[1.42, 14.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41811874 | 1.30% | 55702 |
| chr1 | 2669045 | 1.07% | 3787 |
| chr1_KI270712v1_random | 339 | 0.19% | 1 |
| chr2 | 1958829 | 0.81% | 2784 |
| chr3 | 1206018 | 0.61% | 1912 |
| chr4 | 1503443 | 0.79% | 2213 |
| chr5 | 1834965 | 1.01% | 2539 |
| chr6 | 2656429 | 1.56% | 3555 |
| chr7 | 4322149 | 2.71% | 5051 |
| chr8 | 1781718 | 1.23% | 2578 |
| chr9 | 1627748 | 1.18% | 2234 |
| chr9_KI270719v1_random | 2752 | 1.56% | 5 |
| chr10 | 1245827 | 0.93% | 1694 |
| chr11 | 1584930 | 1.17% | 2404 |
| chr12 | 2169561 | 1.63% | 2653 |
| chr13 | 1016062 | 0.89% | 1271 |
| chr14 | 1477116 | 1.38% | 2039 |
| chr14_GL000194v1_random | 967 | 0.51% | 2 |
| chr14_GL000225v1_random | 27654 | 13.10% | 32 |
| chr14_KI270724v1_random | 1551 | 3.92% | 4 |
| chr15 | 836535 | 0.82% | 1227 |
| chr16 | 1434380 | 1.59% | 1414 |
| chr17 | 3182618 | 3.82% | 3486 |
| chr17_GL000205v2_random | 63827 | 34.39% | 28 |
| chr18 | 1444244 | 1.80% | 1772 |
| chr19 | 2695776 | 4.60% | 3234 |
| chr20 | 1231124 | 1.91% | 1700 |
| chr21 | 626931 | 1.34% | 722 |
| chr22 | 482625 | 0.95% | 757 |
| chr22_KI270733v1_random | 8614 | 4.79% | 14 |
| chrUn_GL000195v1 | 2242 | 1.23% | 3 |
| chrUn_GL000214v1 | 1772 | 1.29% | 4 |
| chrUn_GL000218v1 | 661 | 0.41% | 1 |
| chrUn_GL000219v1 | 15141 | 8.45% | 14 |
| chrUn_GL000220v1 | 1751 | 1.08% | 6 |
| chrUn_GL000224v1 | 2436 | 1.36% | 6 |
| chrUn_KI270337v1 | 347 | 30.95% | 1 |
| chrUn_KI270438v1 | 1702 | 1.51% | 4 |
| chrUn_KI270442v1 | 1863 | 0.48% | 3 |
| chrUn_KI270466v1 | 379 | 30.74% | 1 |
| chrUn_KI270467v1 | 1236 | 31.53% | 2 |
| chrUn_KI270744v1 | 7537 | 4.47% | 11 |
| chrUn_KI270754v1 | 2058 | 5.12% | 5 |
| chrX | 2678972 | 1.72% | 4529 |
| 3323 contigs with no values (183422095 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 55702 | 205 | 20182 | 750.64 | 542 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF277NRX.bed.gz | 1.01 MB | 5ff66f78c97811dec098c5296c48e7f2 |
| ENCFF277NRX.tabix.bed.gz | 530.85 KB | b7f776fee85a1a2a5394b309a11a590f |
| ENCFF277NRX.tabix.bed.gz.tbi | 149.31 KB | fd90310af065abfcd0d4afbb74790ae8 |
| genomic_resource.yaml | 2.38 KB | 2364ca41d0030fb90742f2dcaf40dcc4 |
| statistics/ |