Resource
| Id | Histone_ChIP-seq/ENCSR913MGR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR913MGR [biosample_summary="Homo sapiens PC-9" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN455PPX|/analyses/ENCAN455PPX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF711NYL|/files/ENCFF711NYL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 29696964 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR913MGR | float |
Histone_ChIP-seq_ENCSR913MGR |
Histone_ChIP-seq ENCSR913MGR [biosample_summary="Homo sapiens PC-9" and target="H3K4me1"]
|
 |
[1.15, 10.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 134831970 | 4.19% | 97087 |
| chr1 | 14303092 | 5.75% | 9842 |
| chr2 | 11973523 | 4.94% | 8209 |
| chr3 | 9297486 | 4.69% | 6649 |
| chr4 | 4635007 | 2.44% | 3717 |
| chr5 | 7548349 | 4.16% | 5447 |
| chr6 | 8585493 | 5.03% | 6228 |
| chr7 | 7013497 | 4.40% | 5196 |
| chr8 | 5965330 | 4.11% | 4200 |
| chr9 | 5441557 | 3.93% | 4034 |
| chr10 | 5924275 | 4.43% | 4228 |
| chr11 | 7465140 | 5.53% | 5056 |
| chr12 | 6638407 | 4.98% | 4852 |
| chr13 | 3139146 | 2.74% | 2351 |
| chr14 | 4246410 | 3.97% | 2959 |
| chr15 | 4203344 | 4.12% | 2941 |
| chr16 | 4249101 | 4.70% | 3151 |
| chr17 | 5815444 | 6.98% | 4215 |
| chr18 | 2916490 | 3.63% | 2067 |
| chr19 | 3875587 | 6.61% | 3330 |
| chr20 | 4541577 | 7.05% | 3079 |
| chr21 | 1261330 | 2.70% | 968 |
| chr22 | 2809037 | 5.53% | 1966 |
| chrX | 2982518 | 1.91% | 2401 |
| chrY | 830 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 97087 | 235 | 20729 | 1388.77 | 1032 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF406PHZ.bed.gz | 2.45 MB | d658eaf6a7c4fd16069e47f2cc191669 |
| ENCFF406PHZ.tabix.bed.gz | 1.04 MB | c6744dd68735dcf416ba7588c4176d27 |
| ENCFF406PHZ.tabix.bed.gz.tbi | 292.15 KB | 70bfe3efcbf4b3102b40a8db4bcda4eb |
| genomic_resource.yaml | 1.86 KB | c9140c820b698d974f32b578c436a9fa |
| statistics/ |