Resource

Id Histone_ChIP-seq/ENCSR912VCUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR912VCU [biosample_summary="Homo sapiens heart left ventricle tissue female adult (46 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR912VCU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue female adult (46 years)
  • date_created: 2020-05-01T02:54:52.262104+00:00
  • date_released: 2020-09-15
  • doi: 10.17989/ENCSR912VCU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR912VCU float

Histone_ChIP-seq_ENCSR912VCU
Histone_ChIP-seq ENCSR912VCU [biosample_summary="Homo sapiens heart left ventricle tissue female adult (46 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR912VCU [1.93, 24.7]
n
24,852,150
mean
9.72
sd
3.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248521500.77% 19558
chr1 2435987 0.98% 1914
chr2 1754777 0.72% 1342
chr3 1428479 0.72% 1072
chr4 1044378 0.55% 743
chr5 1223877 0.67% 877
chr6 1488144 0.87% 1144
chr7 1233153 0.77% 1004
chr8 952767 0.66% 731
chr9 1016396 0.73% 834
chr10 1090872 0.82% 819
chr11 1345966 1.00% 1053
chr12 1289235 0.97% 991
chr13 532959 0.47% 390
chr14 842074 0.79% 667
chr15 816712 0.80% 631
chr16 962544 1.07% 787
chr17 1433193 1.72% 1144
chr18 440932 0.55% 348
chr19 1527113 2.61% 1348
chr20 645993 1.00% 518
chr21 229888 0.49% 185
chr22 535523 1.05% 459
chrX 579686 0.37% 555
chrY 1502 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19558 240 7786 1270.69 1135
global segment-length histogram

Files

Filename Size md5
ENCFF437DEF.bed.gz 485.63 KB 7d42474a2fc323762938ca682894ed65
ENCFF437DEF.tabix.bed.gz 220.06 KB befef69812d00d38e50786d0cbae2f40
ENCFF437DEF.tabix.bed.gz.tbi 128.76 KB f32be73626f2f014ed55baad57cd87f0
genomic_resource.yaml 1.75 KB 83f6b5611856edd638a491454cd19c5b
statistics/