Resource
| Id | Histone_ChIP-seq/ENCSR911ONC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR911ONC [biosample_summary="Homo sapiens BLaER1 48 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1 summary: 48 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR911ONC | float |
Histone_ChIP-seq_ENCSR911ONC |
Histone_ChIP-seq ENCSR911ONC [biosample_summary="Homo sapiens BLaER1 48 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
|
 |
[1.56, 37] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 237504584 | 7.38% | 181496 |
| chr1 | 22958052 | 9.22% | 17222 |
| chr1_KI270712v1_random | 3119 | 1.77% | 4 |
| chr1_KI270713v1_random | 7097 | 17.42% | 12 |
| chr1_KI270714v1_random | 1310 | 3.14% | 4 |
| chr2 | 18178163 | 7.51% | 14602 |
| chr3 | 13245788 | 6.68% | 10816 |
| chr3_GL000221v1_random | 2782 | 1.79% | 5 |
| chr4 | 8835632 | 4.65% | 7664 |
| chr4_GL000008v2_random | 392 | 0.19% | 1 |
| chr5 | 11559044 | 6.37% | 9383 |
| chr6 | 12172083 | 7.13% | 9754 |
| chr7 | 11576197 | 7.26% | 9279 |
| chr8 | 10815281 | 7.45% | 8478 |
| chr9 | 10251226 | 7.41% | 7840 |
| chr9_KI270717v1_random | 264 | 0.66% | 1 |
| chr9_KI270718v1_random | 866 | 2.28% | 3 |
| chr9_KI270719v1_random | 674 | 0.38% | 2 |
| chr10 | 11926696 | 8.91% | 9249 |
| chr11 | 11948669 | 8.85% | 8677 |
| chr11_KI270721v1_random | 1589 | 1.58% | 4 |
| chr12 | 11323284 | 8.50% | 8352 |
| chr13 | 5077624 | 4.44% | 4450 |
| chr14 | 7574085 | 7.08% | 5674 |
| chr14_GL000009v2_random | 634 | 0.31% | 1 |
| chr14_GL000194v1_random | 2590 | 1.35% | 6 |
| chr14_GL000225v1_random | 975 | 0.46% | 1 |
| chr14_KI270723v1_random | 1515 | 3.97% | 3 |
| chr14_KI270724v1_random | 250 | 0.63% | 1 |
| chr14_KI270726v1_random | 1843 | 4.21% | 5 |
| chr15 | 8014275 | 7.86% | 6066 |
| chr15_KI270727v1_random | 2088 | 0.47% | 5 |
| chr16 | 10201191 | 11.29% | 7013 |
| chr16_KI270728v1_random | 1795 | 0.10% | 2 |
| chr17 | 13472085 | 16.18% | 8771 |
| chr17_GL000205v2_random | 17049 | 9.19% | 12 |
| chr18 | 4582927 | 5.70% | 3860 |
| chr19 | 10524317 | 17.95% | 6528 |
| chr20 | 7986386 | 12.39% | 5924 |
| chr21 | 3305935 | 7.08% | 2546 |
| chr22 | 6591836 | 12.97% | 4458 |
| chr22_KI270731v1_random | 1940 | 1.29% | 3 |
| chr22_KI270733v1_random | 5012 | 2.79% | 8 |
| chr22_KI270734v1_random | 1209 | 0.73% | 3 |
| chr22_KI270735v1_random | 372 | 0.87% | 1 |
| chrUn_GL000195v1 | 5541 | 3.03% | 9 |
| chrUn_GL000214v1 | 1184 | 0.86% | 2 |
| chrUn_GL000216v2 | 1007 | 0.57% | 1 |
| chrUn_GL000219v1 | 9592 | 5.35% | 12 |
| chrUn_GL000220v1 | 1719 | 1.06% | 5 |
| chrUn_GL000224v1 | 765 | 0.43% | 1 |
| chrUn_KI270442v1 | 930 | 0.24% | 2 |
| chrUn_KI270519v1 | 1549 | 1.12% | 1 |
| chrUn_KI270742v1 | 378 | 0.20% | 1 |
| chrUn_KI270744v1 | 6134 | 3.64% | 8 |
| chrUn_KI270751v1 | 915 | 0.61% | 2 |
| chrUn_KI270753v1 | 3150 | 5.00% | 3 |
| chrX | 5293377 | 3.39% | 4751 |
| chrY | 2202 | <0.01% | 5 |
| 3308 contigs with no values (122210453 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 181496 | 250 | 47855 | 1308.59 | 747 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF527MCF.bed.gz | 3.97 MB | 460235b69e3dba4810a28130e8b9387e |
| ENCFF527MCF.tabix.bed.gz | 1.83 MB | 69ce5e990e557a699a61149ac8158a00 |
| ENCFF527MCF.tabix.bed.gz.tbi | 402.75 KB | 5f558fa59aa2f53dc68dc98defc51f80 |
| genomic_resource.yaml | 3.12 KB | b5d74f26b9b9de64f0c5756d72768f60 |
| statistics/ |