Resource

Id Histone_ChIP-seq/ENCSR910LIEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR910LIE [biosample_summary="Homo sapiens HEK293" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR910LIE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001182/
  • biosample_summary: Homo sapiens HEK293
  • date_created: 2017-05-25T17:23:33.066931+00:00
  • date_released: 2017-06-01
  • doi: 10.17989/ENCSR910LIE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replaces ENCSR000EYE after it was discovered it was HEK293 and not U2OS
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR910LIE float

Histone_ChIP-seq_ENCSR910LIE

Histone_ChIP-seq ENCSR910LIE [biosample_summary="Homo sapiens HEK293" and target="H3K36me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR910LIE [1.69, 40.9]
n
156,052,589
mean
9.36
sd
5.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1560525894.85% 148803
chr1 17326595 6.96% 15035
chr1_KI270711v1_random 603 1.43% 1
chr2 12347457 5.10% 12304
chr3 9663930 4.87% 9626
chr4 6262887 3.29% 6907
chr5 7573396 4.17% 7433
chr6 8174988 4.79% 7980
chr7 5695614 3.57% 5980
chr8 3832727 2.64% 4658
chr9 6754835 4.88% 6403
chr9_KI270718v1_random 589 1.55% 1
chr10 6513626 4.87% 6442
chr11 8256939 6.11% 7288
chr12 8145480 6.11% 7666
chr13 2811754 2.46% 3356
chr14 5228663 4.88% 5309
chr15 4923141 4.83% 5240
chr16 6631090 7.34% 5465
chr17 9997061 12.01% 8355
chr17_GL000205v2_random 1227 0.66% 1
chr18 2411139 3.00% 2892
chr19 7964794 13.59% 6703
chr20 4833761 7.50% 4048
chr21 1738983 3.72% 1643
chr22 4577925 9.01% 3442
chrUn_GL000195v1 788 0.43% 1
chrX 4382597 2.81% 4624
3339 contigs with no values (185855749 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 148803 210 31870 1048.72 640
global segment-length histogram

Files

Filename Size md5
ENCFF111DMJ.bed.gz 3.23 MB 8a6a16a29f6e5a1c34b0674b1b0088a8
ENCFF111DMJ.tabix.bed.gz 1.5 MB 21dacf778473b52705e002258c8a1b43
ENCFF111DMJ.tabix.bed.gz.tbi 169.19 KB 2b535aa613e632b7e44d828f8683758e
genomic_resource.yaml 1.45 KB 25e47a83315353e46282c907c10cf40c
statistics/