Resource
| Id | Histone_ChIP-seq/ENCSR905SHH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR905SHH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN607FPP|/analyses/ENCAN607FPP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF575CEK|/files/ENCFF575CEK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 20764619 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed redacted unfiltered alignments file {ENCFF450STF|/files/ENCFF450STF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 37977489 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR905SHH | float |
Histone_ChIP-seq_ENCSR905SHH |
Histone_ChIP-seq ENCSR905SHH [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K9me3"]
|
 |
[1.49, 8.79] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6708085 | 0.21% | 12829 |
| chr1 | 397075 | 0.16% | 816 |
| chr2 | 393215 | 0.16% | 874 |
| chr3 | 340387 | 0.17% | 737 |
| chr4 | 367908 | 0.19% | 804 |
| chr5 | 375347 | 0.21% | 803 |
| chr6 | 240402 | 0.14% | 548 |
| chr7 | 347542 | 0.22% | 688 |
| chr8 | 256157 | 0.18% | 562 |
| chr9 | 222359 | 0.16% | 439 |
| chr10 | 249831 | 0.19% | 489 |
| chr11 | 208061 | 0.15% | 470 |
| chr12 | 342325 | 0.26% | 615 |
| chr13 | 156178 | 0.14% | 369 |
| chr14 | 160891 | 0.15% | 375 |
| chr15 | 180259 | 0.18% | 309 |
| chr16 | 239832 | 0.27% | 460 |
| chr17 | 97470 | 0.12% | 193 |
| chr18 | 130324 | 0.16% | 291 |
| chr19 | 1656039 | 2.83% | 2321 |
| chr20 | 91895 | 0.14% | 187 |
| chr21 | 126457 | 0.27% | 224 |
| chr22 | 43269 | 0.09% | 81 |
| chrX | 49151 | 0.03% | 107 |
| chrY | 35711 | 0.06% | 67 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 12829 | 205 | 9740 | 522.88 | 411 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF455SGI.bed.gz | 264.12 KB | ccae0cee30ac2851ea4670451710c50a |
| ENCFF455SGI.tabix.bed.gz | 131.9 KB | 24d8232b84c8fccfc8d69750a4eb38dd |
| ENCFF455SGI.tabix.bed.gz.tbi | 81.38 KB | 8d248697de65d88126c21c80a09b24a0 |
| genomic_resource.yaml | 2.53 KB | 1b1ffa07065467e5f8568fd23d5b24a5 |
| statistics/ |