Resource
| Id | Histone_ChIP-seq/ENCSR901SIL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR901SIL [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN235FIY|/analyses/ENCAN235FIY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF813MFQ|/files/ENCFF813MFQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF813MFQ|/files/ENCFF813MFQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.94. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR901SIL | float |
Histone_ChIP-seq_ENCSR901SIL |
Histone_ChIP-seq ENCSR901SIL [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K4me3"]
|
 |
[1.24, 45.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45615462 | 1.42% | 27005 |
| chr1 | 4527824 | 1.82% | 2575 |
| chr2 | 3076624 | 1.27% | 1818 |
| chr3 | 2644468 | 1.33% | 1516 |
| chr4 | 1888243 | 0.99% | 1097 |
| chr5 | 2214500 | 1.22% | 1266 |
| chr6 | 2673380 | 1.57% | 1542 |
| chr7 | 2222814 | 1.39% | 1343 |
| chr8 | 1771026 | 1.22% | 1047 |
| chr9 | 1915545 | 1.38% | 1168 |
| chr10 | 2031142 | 1.52% | 1236 |
| chr11 | 2433026 | 1.80% | 1404 |
| chr12 | 2449640 | 1.84% | 1419 |
| chr13 | 1003975 | 0.88% | 617 |
| chr14 | 1440561 | 1.35% | 837 |
| chr15 | 1456769 | 1.43% | 867 |
| chr16 | 1725133 | 1.91% | 1085 |
| chr17 | 2546700 | 3.06% | 1495 |
| chr18 | 816508 | 1.02% | 489 |
| chr19 | 2801761 | 4.78% | 1729 |
| chr20 | 1165053 | 1.81% | 689 |
| chr21 | 450568 | 0.96% | 289 |
| chr22 | 1011909 | 1.99% | 635 |
| chrM | 9882 | 59.64% | 7 |
| chrX | 1337967 | 0.86% | 834 |
| chrY | 444 | <0.01% | 1 |
| 3341 contigs with no values (129060516 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 27005 | 195 | 16370 | 1689.15 | 1397 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF086QMV.bed.gz | 760.18 KB | c8fabd18ac54ff5ec872b680240c22fa |
| ENCFF086QMV.tabix.bed.gz | 316.77 KB | c99d7f923b2477d954b29e11d72f4d39 |
| ENCFF086QMV.tabix.bed.gz.tbi | 166.48 KB | 009146e86003d4f5323f926f685e8c73 |
| genomic_resource.yaml | 2.78 KB | 6470fdee8c8864b791577cab677a5a72 |
| statistics/ |