Resource
| Id | Histone_ChIP-seq/ENCSR901SCD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR901SCD [biosample_summary="Homo sapiens temporal lobe tissue male adult (81 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN688ESX|/analyses/ENCAN688ESX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF233BJK|/files/ENCFF233BJK/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 24784074 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR901SCD | float |
Histone_ChIP-seq_ENCSR901SCD |
Histone_ChIP-seq ENCSR901SCD [biosample_summary="Homo sapiens temporal lobe tissue male adult (81 years)" and target="H3K4me1"]
|
 |
[1.75, 17.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 91565550 | 2.85% | 108835 |
| chr1 | 9490608 | 3.81% | 10806 |
| chr2 | 7036159 | 2.91% | 8440 |
| chr3 | 5679082 | 2.86% | 7037 |
| chr4 | 3516002 | 1.85% | 4540 |
| chr5 | 5008778 | 2.76% | 6111 |
| chr6 | 4837481 | 2.83% | 6037 |
| chr7 | 4349781 | 2.73% | 5475 |
| chr8 | 3526046 | 2.43% | 4469 |
| chr9 | 4616779 | 3.34% | 5298 |
| chr10 | 5036727 | 3.76% | 5739 |
| chr11 | 5842158 | 4.32% | 6546 |
| chr12 | 4123335 | 3.09% | 5036 |
| chr13 | 2064874 | 1.81% | 2663 |
| chr14 | 3234622 | 3.02% | 3785 |
| chr15 | 3319059 | 3.25% | 3924 |
| chr16 | 3277192 | 3.63% | 3774 |
| chr17 | 4895375 | 5.88% | 5348 |
| chr18 | 1837728 | 2.29% | 2311 |
| chr19 | 3071597 | 5.24% | 3496 |
| chr20 | 2796172 | 4.34% | 3111 |
| chr21 | 919658 | 1.97% | 1162 |
| chr22 | 2271309 | 4.47% | 2492 |
| chrX | 796291 | 0.51% | 1203 |
| chrY | 18737 | 0.03% | 32 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108835 | 225 | 13847 | 841.32 | 663 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF592RHP.bed.gz | 2.15 MB | a6975bc55c115c45ff9c760ed7d984c8 |
| ENCFF592RHP.tabix.bed.gz | 1.06 MB | ac5e72b31b39d1319b0a61bc78f628ee |
| ENCFF592RHP.tabix.bed.gz.tbi | 308.02 KB | 243727a5cf936df297b8c08df3673f47 |
| genomic_resource.yaml | 2.0 KB | 568549eb42546cd2a1f90aa0d8af38e7 |
| statistics/ |