Resource

Id Histone_ChIP-seq/ENCSR901BRVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR901BRV [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR901BRV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue male adult (37 years)
  • date_created: 2016-03-19T00:37:52.927252+00:00
  • date_released: 2016-05-23
  • doi: 10.17989/ENCSR901BRV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR901BRV float

Histone_ChIP-seq_ENCSR901BRV
Histone_ChIP-seq ENCSR901BRV [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR901BRV [1.14, 14.6]
n
18,908,550
mean
5.17
sd
1.96

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 189085500.59% 30254
chr1 1824704 0.73% 2848
chr2 1390840 0.57% 2263
chr3 1185930 0.60% 1946
chr4 895633 0.47% 1528
chr5 938375 0.52% 1564
chr6 1134327 0.66% 1818
chr7 927554 0.58% 1543
chr8 771311 0.53% 1297
chr9 798370 0.58% 1266
chr10 827484 0.62% 1339
chr11 1023713 0.76% 1554
chr12 986621 0.74% 1531
chr13 431500 0.38% 756
chr14 670663 0.63% 1089
chr15 616708 0.60% 970
chr16 717759 0.79% 1074
chr17 987460 1.19% 1461
chr17_GL000205v2_random 1366 0.74% 3
chr17_KI270729v1_random 520 0.19% 2
chr18 360263 0.45% 618
chr19 1036331 1.77% 1510
chr20 485727 0.75% 747
chr21 180070 0.39% 315
chr22 368637 0.73% 549
chr22_KI270736v1_random 589 0.32% 2
chr22_KI270738v1_random 876 0.88% 3
chrUn_GL000219v1 1442 0.80% 2
chrUn_GL000224v1 278 0.15% 1
chrUn_KI270337v1 480 42.82% 1
chrUn_KI270435v1 452 0.49% 1
chrUn_KI270438v1 284 0.25% 1
chrUn_KI270442v1 776 0.20% 2
chrUn_KI270515v1 417 6.56% 1
chrUn_KI270517v1 274 8.42% 1
chrUn_KI270519v1 277 0.20% 1
chrUn_KI270746v1 272 0.41% 1
chrUn_KI270751v1 603 0.40% 2
chrUn_KI270756v1 480 0.60% 1
chrX 325465 0.21% 617
chrY 13719 0.02% 26
3326 contigs with no values (126927241 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30254 250 5561 624.99 442
global segment-length histogram

Files

Filename Size md5
ENCFF216QJS.bed.gz 498.44 KB 9d7dcb3389234b9ca2147fc7b75b6110
ENCFF216QJS.tabix.bed.gz 311.25 KB afe0a4cef3d0dd82df9cee9d46839ce2
ENCFF216QJS.tabix.bed.gz.tbi 184.54 KB 73cecbb5ab8d3b841e9b1a738df8bf49
genomic_resource.yaml 1.49 KB 69c3e111fbf3236c7af11209ade517d9
statistics/