Resource
| Id | Histone_ChIP-seq/ENCSR899DSF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR899DSF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN976RXT|/analyses/ENCAN976RXT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF952XYR|/files/ENCFF952XYR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF952XYR|/files/ENCFF952XYR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.79. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR899DSF | float |
Histone_ChIP-seq_ENCSR899DSF |
Histone_ChIP-seq ENCSR899DSF [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me1"]
|
 |
[1.61, 6.52] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24200664 | 0.75% | 47732 |
| chr1 | 2620366 | 1.05% | 5057 |
| chr2 | 1794746 | 0.74% | 3664 |
| chr3 | 1551515 | 0.78% | 3176 |
| chr4 | 620128 | 0.33% | 1359 |
| chr5 | 1094070 | 0.60% | 2256 |
| chr6 | 969868 | 0.57% | 2175 |
| chr7 | 897141 | 0.56% | 1943 |
| chr8 | 877603 | 0.60% | 1871 |
| chr9 | 1236042 | 0.89% | 2307 |
| chr10 | 1395555 | 1.04% | 2598 |
| chr11 | 1524119 | 1.13% | 2929 |
| chr12 | 1246019 | 0.93% | 2370 |
| chr13 | 410497 | 0.36% | 901 |
| chr14 | 819907 | 0.77% | 1579 |
| chr15 | 934156 | 0.92% | 1874 |
| chr16 | 1007711 | 1.12% | 1920 |
| chr17 | 1673090 | 2.01% | 3059 |
| chr18 | 358492 | 0.45% | 803 |
| chr19 | 1252948 | 2.14% | 2229 |
| chr20 | 755599 | 1.17% | 1508 |
| chr21 | 203445 | 0.44% | 433 |
| chr22 | 903457 | 1.78% | 1590 |
| chrX | 54190 | 0.03% | 131 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 47732 | 195 | 7054 | 507.01 | 397 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF680TQM.bed.gz | 980.9 KB | e74b59ca54b6ab8c34616b3e9788cb7e |
| ENCFF680TQM.tabix.bed.gz | 491.71 KB | 208eafba34df79872de1f050ed286f8c |
| ENCFF680TQM.tabix.bed.gz.tbi | 179.84 KB | be0b75b0e682a68512da0dd6677ab944 |
| genomic_resource.yaml | 2.79 KB | dc871556097dec51bf8b4edea8f201d0 |
| statistics/ |