Resource
| Id | Histone_ChIP-seq/ENCSR893MHU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR893MHU [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN376HQP|/analyses/ENCAN376HQP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF406EOK|/files/ENCFF406EOK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21450110 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR893MHU | float |
Histone_ChIP-seq_ENCSR893MHU |
Histone_ChIP-seq ENCSR893MHU [biosample_summary="Homo sapiens caudate nucleus tissue male adult (81 years)" and target="H3K36me3"]
|
 |
[1.79, 19.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 68787284 | 2.14% | 73829 |
| chr1 | 6978844 | 2.80% | 7428 |
| chr1_KI270711v1_random | 458 | 1.09% | 1 |
| chr2 | 4628078 | 1.91% | 5349 |
| chr3 | 4051334 | 2.04% | 4539 |
| chr4 | 2145599 | 1.13% | 2677 |
| chr5 | 2919590 | 1.61% | 3354 |
| chr6 | 2867065 | 1.68% | 3285 |
| chr7 | 2921793 | 1.83% | 3201 |
| chr8 | 2072516 | 1.43% | 2461 |
| chr9 | 3372850 | 2.44% | 3437 |
| chr10 | 2755084 | 2.06% | 3184 |
| chr11 | 3964300 | 2.93% | 4034 |
| chr12 | 3818597 | 2.87% | 3937 |
| chr13 | 1077588 | 0.94% | 1380 |
| chr14 | 2306996 | 2.16% | 2550 |
| chr15 | 2510344 | 2.46% | 2804 |
| chr16 | 3716048 | 4.11% | 3642 |
| chr17 | 4542588 | 5.46% | 4470 |
| chr18 | 920423 | 1.15% | 1163 |
| chr19 | 4979677 | 8.50% | 4631 |
| chr20 | 2432798 | 3.78% | 2428 |
| chr21 | 840447 | 1.80% | 898 |
| chr22 | 2285528 | 4.50% | 2120 |
| chrX | 661864 | 0.42% | 835 |
| chrY | 16875 | 0.03% | 21 |
| 3341 contigs with no values (129034875 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73829 | 235 | 14647 | 931.71 | 710 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF509AFJ.bed.gz | 1.44 MB | bdd774cbe9eb433f129952ce216044a7 |
| ENCFF509AFJ.tabix.bed.gz | 733.88 KB | d335d57d1059b293225a4fb7b3e2d4ea |
| ENCFF509AFJ.tabix.bed.gz.tbi | 153.63 KB | c6577bc04002c47e94553da2d9480950 |
| genomic_resource.yaml | 2.01 KB | c8aed66887dafd774ddb41a257520ad5 |
| statistics/ |