Resource
| Id | Histone_ChIP-seq/ENCSR892RZN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR892RZN [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN723END|/analyses/ENCAN723END/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF144JVO|/files/ENCFF144JVO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF144JVO|/files/ENCFF144JVO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.51. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR892RZN | float |
Histone_ChIP-seq_ENCSR892RZN |
Histone_ChIP-seq ENCSR892RZN [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K9ac"]
|
 |
[1.77, 43.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49867694 | 1.55% | 70898 |
| chr1 | 5257416 | 2.11% | 7331 |
| chr2 | 3365510 | 1.39% | 4759 |
| chr3 | 2711720 | 1.37% | 3677 |
| chr4 | 1610855 | 0.85% | 2263 |
| chr5 | 2167825 | 1.19% | 3002 |
| chr6 | 2446495 | 1.43% | 3387 |
| chr7 | 2091198 | 1.31% | 3162 |
| chr8 | 1690692 | 1.16% | 2491 |
| chr9 | 2417429 | 1.75% | 3463 |
| chr10 | 2378021 | 1.78% | 3291 |
| chr11 | 3168609 | 2.35% | 4399 |
| chr12 | 2456658 | 1.84% | 3358 |
| chr13 | 908579 | 0.79% | 1307 |
| chr14 | 1716321 | 1.60% | 2453 |
| chr15 | 1600408 | 1.57% | 2310 |
| chr16 | 2130434 | 2.36% | 3217 |
| chr17 | 3363658 | 4.04% | 4833 |
| chr18 | 807485 | 1.00% | 1163 |
| chr19 | 3105155 | 5.30% | 4360 |
| chr20 | 1456812 | 2.26% | 2159 |
| chr21 | 547138 | 1.17% | 825 |
| chr22 | 1565532 | 3.08% | 2249 |
| chrX | 903744 | 0.58% | 1439 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 70898 | 155 | 12659 | 703.37 | 515 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF359DCF.bed.gz | 1.49 MB | b1e730a55ce7ff06c55b6d5e5c36840b |
| ENCFF359DCF.tabix.bed.gz | 722.55 KB | ecaf381e6e1c764047fbdad21b197fd4 |
| ENCFF359DCF.tabix.bed.gz.tbi | 221.26 KB | d5724ffa80b859fd5dcfce5ccb9d2d3c |
| genomic_resource.yaml | 2.8 KB | 1bc9717f1bea3bbc02a5ec62deed96cd |
| statistics/ |