Resource
| Id | Histone_ChIP-seq/ENCSR891XGQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR891XGQ [biosample_summary="Homo sapiens angular gyrus tissue female adult (75 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN311ITH|/analyses/ENCAN311ITH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF519BFV|/files/ENCFF519BFV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16015524 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR891XGQ | float |
Histone_ChIP-seq_ENCSR891XGQ |
Histone_ChIP-seq ENCSR891XGQ [biosample_summary="Homo sapiens angular gyrus tissue female adult (75 years)" and target="H3K27ac"]
|
 |
[1.94, 74.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59696181 | 1.86% | 74756 |
| chr1 | 6141342 | 2.47% | 7480 |
| chr2 | 4258880 | 1.76% | 5459 |
| chr3 | 3472084 | 1.75% | 4500 |
| chr4 | 2168434 | 1.14% | 2938 |
| chr5 | 3051449 | 1.68% | 3909 |
| chr6 | 2873535 | 1.68% | 3651 |
| chr7 | 2565208 | 1.61% | 3433 |
| chr8 | 2468998 | 1.70% | 3152 |
| chr9 | 2970252 | 2.15% | 3617 |
| chr10 | 3007428 | 2.25% | 3582 |
| chr11 | 3764785 | 2.79% | 4548 |
| chr12 | 2969667 | 2.23% | 3760 |
| chr13 | 1220792 | 1.07% | 1601 |
| chr14 | 2077285 | 1.94% | 2516 |
| chr15 | 2057532 | 2.02% | 2596 |
| chr16 | 2115530 | 2.34% | 2630 |
| chr17 | 3507713 | 4.21% | 4194 |
| chr18 | 1076707 | 1.34% | 1441 |
| chr19 | 2786064 | 4.75% | 3357 |
| chr20 | 1785607 | 2.77% | 2213 |
| chr21 | 657352 | 1.41% | 827 |
| chr22 | 1617596 | 3.18% | 1887 |
| chrX | 1081941 | 0.69% | 1465 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 74756 | 170 | 16320 | 798.55 | 572 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF794OTB.bed.gz | 1.6 MB | f1eeda49d883ddeb550312397eaeea61 |
| ENCFF794OTB.tabix.bed.gz | 772.68 KB | af1d53d19f6dc2c7955e8d9a3ed80fb9 |
| ENCFF794OTB.tabix.bed.gz.tbi | 230.74 KB | 1b0df1f4b12c437568da479aec2ba300 |
| genomic_resource.yaml | 2.0 KB | 7205117b9e9689ddb5931f3297af7915 |
| statistics/ |