Resource
| Id | Histone_ChIP-seq/ENCSR876RGF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR876RGF [biosample_summary="Homo sapiens H9" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN793UTP|/analyses/ENCAN793UTP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF775ONB|/files/ENCFF775ONB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13823805 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF930EEK|/files/ENCFF930EEK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16646302 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR876RGF | float |
Histone_ChIP-seq_ENCSR876RGF |
Histone_ChIP-seq ENCSR876RGF [biosample_summary="Homo sapiens H9" and target="H3K27ac"]
|
 |
[1.83, 40.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9486906 | 0.29% | 35056 |
| chr1 | 883124 | 0.35% | 3147 |
| chr2 | 722192 | 0.30% | 2722 |
| chr3 | 647566 | 0.33% | 2482 |
| chr4 | 546633 | 0.29% | 2024 |
| chr5 | 579605 | 0.32% | 2138 |
| chr6 | 719518 | 0.42% | 2567 |
| chr7 | 518987 | 0.33% | 1944 |
| chr8 | 393612 | 0.27% | 1476 |
| chr9 | 353021 | 0.26% | 1358 |
| chr10 | 408934 | 0.31% | 1514 |
| chr11 | 432159 | 0.32% | 1596 |
| chr12 | 515215 | 0.39% | 1897 |
| chr13 | 253477 | 0.22% | 1008 |
| chr14 | 301984 | 0.28% | 1112 |
| chr15 | 263889 | 0.26% | 963 |
| chr16 | 239732 | 0.27% | 907 |
| chr17 | 316131 | 0.38% | 1186 |
| chr18 | 228649 | 0.28% | 827 |
| chr19 | 258368 | 0.44% | 971 |
| chr20 | 199538 | 0.31% | 727 |
| chr21 | 88603 | 0.19% | 344 |
| chr22 | 140515 | 0.28% | 481 |
| chrX | 475454 | 0.30% | 1665 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 35056 | 110 | 3567 | 270.62 | 204 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF437MTJ.bed.gz | 739.44 KB | e0424dbce372ab05f52dd7f256918fe3 |
| ENCFF437MTJ.tabix.bed.gz | 353.34 KB | 00e7c0bc351f9cf1b78c79727ec40b87 |
| ENCFF437MTJ.tabix.bed.gz.tbi | 173.9 KB | 95a4261d4263aaf16584c7086272d253 |
| genomic_resource.yaml | 2.34 KB | 86651f3ca2ab7bc911ba352049ead723 |
| statistics/ |