Resource

Id Histone_ChIP-seq/ENCSR874HIGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR874HIG [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR874HIG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001211/
  • biosample_summary: Homo sapiens Peyer's patch tissue female adult (51 years)
  • date_created: 2018-10-31T03:06:52.567483+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR874HIG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR874HIG float

Histone_ChIP-seq_ENCSR874HIG
Histone_ChIP-seq ENCSR874HIG [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR874HIG [1.29, 9.32]
n
21,645,746
mean
4.07
sd
1.04

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 216457460.67% 26123
chr1 2252484 0.90% 2645
chr2 1294381 0.53% 1633
chr3 895769 0.45% 1168
chr4 464047 0.24% 617
chr5 792793 0.44% 1008
chr6 858494 0.50% 1210
chr7 871213 0.55% 1103
chr8 733107 0.51% 914
chr9 1074174 0.78% 1235
chr10 946016 0.71% 1172
chr11 1402993 1.04% 1560
chr12 943396 0.71% 1190
chr13 274715 0.24% 373
chr14 714692 0.67% 864
chr15 766119 0.75% 909
chr16 1326847 1.47% 1562
chr17 1769789 2.13% 1993
chr18 246590 0.31% 341
chr19 1975219 3.37% 2190
chr20 764831 1.19% 905
chr21 256777 0.55% 323
chr22 868021 1.71% 988
chrX 153279 0.10% 220
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26123 210 8932 828.61 687
global segment-length histogram

Files

Filename Size md5
ENCFF105TKL.bed.gz 506.65 KB 4e59c82bdc98c001e4a40242cd46dcb0
ENCFF105TKL.tabix.bed.gz 262.17 KB 7f41e9bc0ae3fcae7bb5ec034b6b98df
ENCFF105TKL.tabix.bed.gz.tbi 119.95 KB b8e3bb5cccae11c776cf33a7ee96d296
genomic_resource.yaml 1.52 KB 75782fc19411e91f6bbf9b955338c291
statistics/