Resource

Id Histone_ChIP-seq/ENCSR872WVRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR872WVR [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR872WVR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004550/
  • biosample_summary: Homo sapiens gastroesophageal sphincter tissue female adult (53 years)
  • date_created: 2016-10-19T23:03:34.766830+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR872WVR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR872WVR float

Histone_ChIP-seq_ENCSR872WVR
Histone_ChIP-seq ENCSR872WVR [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR872WVR [1.45, 7.91]
n
51,801,427
mean
3.27
sd
0.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 518014271.61% 72722
chr1 5557817 2.23% 7464
chr2 4006074 1.65% 5855
chr3 3326083 1.68% 4897
chr4 1641848 0.86% 2623
chr5 2391189 1.32% 3442
chr6 2343681 1.37% 3679
chr7 2290892 1.44% 3442
chr8 1937598 1.33% 2946
chr9 2575128 1.86% 3405
chr10 2901947 2.17% 4083
chr11 3100377 2.30% 4136
chr12 2509520 1.88% 3535
chr13 1044533 0.91% 1602
chr14 1807907 1.69% 2467
chr15 1917364 1.88% 2681
chr16 2041205 2.26% 2703
chr17 3217089 3.86% 4045
chr18 780452 0.97% 1237
chr19 2490036 4.25% 3060
chr20 1590049 2.47% 2164
chr21 529208 1.13% 812
chr22 1537141 3.02% 1948
chrX 264289 0.17% 496
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72722 225 13785 712.32 546
global segment-length histogram

Files

Filename Size md5
ENCFF169EST.bed.gz 1.51 MB 72db753b55f9b9776be93e40bbf65b42
ENCFF169EST.tabix.bed.gz 766.44 KB 07ccefa7fce94cb44755d3b7f19aaba0
ENCFF169EST.tabix.bed.gz.tbi 237.54 KB 98427a4009893884e94cf2e1944ae23d
genomic_resource.yaml 1.56 KB 995f698c62c712acc4d08e955771cb92
statistics/