Resource

Id Histone_ChIP-seq/ENCSR869TDTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR869TDT [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (80 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR869TDT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (80 years)
  • date_created: 2020-07-02T16:40:18.690530+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR869TDT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (80 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR869TDT float

Histone_ChIP-seq_ENCSR869TDT
Histone_ChIP-seq ENCSR869TDT [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue female adult (80 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR869TDT [1.84, 36.8]
n
36,188,833
mean
7.94
sd
4.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 361888331.12% 32665
chr1 3833110 1.54% 3331
chr2 2665259 1.10% 2449
chr3 2032454 1.02% 1885
chr4 1046045 0.55% 996
chr5 1667403 0.92% 1537
chr6 1947352 1.14% 1783
chr7 1554235 0.98% 1493
chr8 1293410 0.89% 1229
chr9 1572311 1.14% 1476
chr10 1729897 1.29% 1576
chr11 2061230 1.53% 1758
chr12 1973225 1.48% 1707
chr13 635894 0.56% 617
chr14 1339814 1.25% 1157
chr15 1230436 1.21% 1096
chr16 1477885 1.64% 1341
chr17 2293868 2.76% 1941
chr18 608337 0.76% 605
chr19 2047858 3.49% 1743
chr20 1091238 1.69% 1012
chr21 497096 1.06% 480
chr22 961290 1.89% 813
chrX 629186 0.40% 640
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32665 230 15441 1107.88 852
global segment-length histogram

Files

Filename Size md5
ENCFF083HKS.bed.gz 758.3 KB ed81a230fb5dffd36a48f77941118bce
ENCFF083HKS.tabix.bed.gz 353.37 KB 6eb420bf91dd5b0b07bfb868cccbd203
ENCFF083HKS.tabix.bed.gz.tbi 160.43 KB cceecb74886129dd8220d168d6677538
genomic_resource.yaml 1.88 KB 72750ce1b72e52996bcd0a051f9094b2
statistics/