Resource
| Id | Histone_ChIP-seq/ENCSR864ECD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR864ECD [biosample_summary="Homo sapiens left lung tissue male adult (40 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN390LUD|/analyses/ENCAN390LUD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN390LUD|/analyses/ENCAN390LUD/} has in progress subobject document {8a24eb12-d7ca-4e35-a5c6-8dbcb3714701|/documents/8a24eb12-d7ca-4e35-a5c6-8dbcb3714701/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF368MEO|/files/ENCFF368MEO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF368MEO|/files/ENCFF368MEO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.18. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR864ECD | float |
Histone_ChIP-seq_ENCSR864ECD |
Histone_ChIP-seq ENCSR864ECD [biosample_summary="Homo sapiens left lung tissue male adult (40 years)" and target="H3K4me3"]
|
 |
[2.03, 82.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50290847 | 1.56% | 23637 |
| chr1 | 5085461 | 2.04% | 2401 |
| chr2 | 3345962 | 1.38% | 1554 |
| chr3 | 2833319 | 1.43% | 1277 |
| chr4 | 1944747 | 1.02% | 893 |
| chr5 | 2323538 | 1.28% | 1057 |
| chr6 | 2869143 | 1.68% | 1311 |
| chr7 | 2449325 | 1.54% | 1179 |
| chr8 | 1808464 | 1.25% | 892 |
| chr9 | 2117972 | 1.53% | 1026 |
| chr10 | 2063116 | 1.54% | 990 |
| chr11 | 2698823 | 2.00% | 1221 |
| chr12 | 2709947 | 2.03% | 1220 |
| chr13 | 1003113 | 0.88% | 484 |
| chr14 | 1612166 | 1.51% | 730 |
| chr15 | 1599164 | 1.57% | 764 |
| chr16 | 2037955 | 2.26% | 960 |
| chr17 | 3038020 | 3.65% | 1398 |
| chr18 | 796375 | 0.99% | 395 |
| chr19 | 3453668 | 5.89% | 1693 |
| chr20 | 1353434 | 2.10% | 648 |
| chr21 | 525393 | 1.12% | 255 |
| chr22 | 1177154 | 2.32% | 581 |
| chrX | 1390951 | 0.89% | 683 |
| chrY | 53637 | 0.09% | 25 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 23637 | 268 | 16192 | 2127.63 | 1876 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF937RVI.bed.gz | 618.51 KB | 79e12b155d4e70adb11087c74021113d |
| ENCFF937RVI.tabix.bed.gz | 272.69 KB | c82dede5e6bf25bcef963b91ac84bf42 |
| ENCFF937RVI.tabix.bed.gz.tbi | 151.92 KB | 7461b612d252ac0800f1520b78e24448 |
| genomic_resource.yaml | 2.97 KB | 68403f43ac1b59c495aa2adc2ba14d90 |
| statistics/ |