Resource
| Id | Histone_ChIP-seq/ENCSR863GVT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR863GVT [biosample_summary="Homo sapiens spinal cord tissue female embryo (108 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (108 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN633WKQ|/analyses/ENCAN633WKQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN633WKQ|/analyses/ENCAN633WKQ/} has in progress subobject document {4dba5320-0145-45ec-80ff-1e50a755e69c|/documents/4dba5320-0145-45ec-80ff-1e50a755e69c/} audit_not_compliant: Processed alignments file {ENCFF864ARA|/files/ENCFF864ARA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17045310 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR863GVT | float |
Histone_ChIP-seq_ENCSR863GVT |
Histone_ChIP-seq ENCSR863GVT [biosample_summary="Homo sapiens spinal cord tissue female embryo (108 days)" and target="H3K4me1"]
|
 |
[1.95, 63.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 110140440 | 3.42% | 138939 |
| chr1 | 11454481 | 4.60% | 14014 |
| chr2 | 7950898 | 3.28% | 10474 |
| chr3 | 5404326 | 2.73% | 7319 |
| chr4 | 2933657 | 1.54% | 4193 |
| chr5 | 4610831 | 2.54% | 6556 |
| chr6 | 4524912 | 2.65% | 6672 |
| chr7 | 5222442 | 3.28% | 6868 |
| chr8 | 3959314 | 2.73% | 5435 |
| chr9 | 5359301 | 3.87% | 6218 |
| chr10 | 6099618 | 4.56% | 7971 |
| chr11 | 7187809 | 5.32% | 8534 |
| chr12 | 4666823 | 3.50% | 5987 |
| chr13 | 1785683 | 1.56% | 2851 |
| chr14 | 3552436 | 3.32% | 4441 |
| chr15 | 3969448 | 3.89% | 5095 |
| chr16 | 5285808 | 5.85% | 6042 |
| chr17 | 7754560 | 9.31% | 8311 |
| chr18 | 2076847 | 2.58% | 3115 |
| chr19 | 5419422 | 9.25% | 5687 |
| chr20 | 3987091 | 6.19% | 4907 |
| chr21 | 1250143 | 2.68% | 1624 |
| chr22 | 4238362 | 8.34% | 4456 |
| chrX | 1446228 | 0.93% | 2169 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 138939 | 205 | 25247 | 792.73 | 565 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF205KTX.bed.gz | 2.8 MB | 871759eccfaf15ce05e5018c6ebc0bd4 |
| ENCFF205KTX.tabix.bed.gz | 1.35 MB | bd4f9ed0dc917d1b9ea8ab32276aa18a |
| ENCFF205KTX.tabix.bed.gz.tbi | 334.91 KB | e87a784bc5b82d5c3919459df9c3beb9 |
| genomic_resource.yaml | 2.22 KB | f5d32eb75f7380a33d23e944af96c0dd |
| statistics/ |