Resource
| Id | Histone_ChIP-seq/ENCSR859EIX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR859EIX [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN197KUX|/analyses/ENCAN197KUX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN197KUX|/analyses/ENCAN197KUX/} has in progress subobject document {54f54bd1-7a3c-4782-b4e8-9519b74d167b|/documents/54f54bd1-7a3c-4782-b4e8-9519b74d167b/} audit_not_compliant: Processed alignments file {ENCFF076DAA|/files/ENCFF076DAA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20698799 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR859EIX | float |
Histone_ChIP-seq_ENCSR859EIX |
Histone_ChIP-seq ENCSR859EIX [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K27me3"]
|
 |
[1.98, 33.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 39485256 | 1.23% | 59888 |
| chr1 | 3870310 | 1.55% | 5907 |
| chr2 | 3295110 | 1.36% | 5158 |
| chr3 | 1864456 | 0.94% | 3126 |
| chr4 | 1515301 | 0.80% | 2196 |
| chr5 | 2276705 | 1.25% | 3457 |
| chr6 | 2483642 | 1.45% | 3662 |
| chr7 | 2012126 | 1.26% | 3083 |
| chr8 | 1501090 | 1.03% | 2489 |
| chr9 | 1871264 | 1.35% | 2796 |
| chr10 | 2080173 | 1.55% | 3193 |
| chr11 | 2357540 | 1.75% | 3723 |
| chr12 | 1859955 | 1.40% | 2675 |
| chr13 | 752938 | 0.66% | 1203 |
| chr14 | 1118806 | 1.05% | 1746 |
| chr15 | 1280467 | 1.26% | 2033 |
| chr16 | 1256176 | 1.39% | 1854 |
| chr17 | 2596837 | 3.12% | 3532 |
| chr18 | 639475 | 0.80% | 1139 |
| chr19 | 2041901 | 3.48% | 2610 |
| chr20 | 1313937 | 2.04% | 2021 |
| chr21 | 282778 | 0.61% | 424 |
| chr22 | 748567 | 1.47% | 1166 |
| chrX | 463974 | 0.30% | 692 |
| chrY | 1728 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 59888 | 170 | 24090 | 659.32 | 403 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF644QDF.bed.gz | 1.12 MB | 2f600471e30d55b3f6ed3ad2c2371599 |
| ENCFF644QDF.tabix.bed.gz | 572.7 KB | 698aa19bf610dd9e5b4ced1e566de3e8 |
| ENCFF644QDF.tabix.bed.gz.tbi | 170.45 KB | 358d683d8b4a4453a986a2ffefa8791a |
| genomic_resource.yaml | 2.22 KB | 5b64f67d65f6ed341bbaec056c7bbf88 |
| statistics/ |