Resource

Id Histone_ChIP-seq/ENCSR850RVAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR850RVA [biosample_summary="Homo sapiens tibial nerve tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR850RVA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue female adult (53 years)
  • date_created: 2017-01-24T04:35:35.943078+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR850RVA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR850RVA float

Histone_ChIP-seq_ENCSR850RVA
Histone_ChIP-seq ENCSR850RVA [biosample_summary="Homo sapiens tibial nerve tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR850RVA [1.61, 11.1]
n
57,886,273
mean
4.04
sd
1.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 578862731.80% 71629
chr1 5934299 2.38% 7156
chr1_KI270712v1_random 313 0.18% 1
chr1_KI270713v1_random 390 0.96% 1
chr2 4542873 1.88% 5719
chr3 3725602 1.88% 4712
chr4 1946525 1.02% 2688
chr5 2865895 1.58% 3681
chr6 2971277 1.74% 3938
chr7 2573130 1.61% 3413
chr8 2196716 1.51% 2937
chr9 2820339 2.04% 3302
chr10 3229205 2.41% 3842
chr11 3449179 2.55% 4096
chr12 2761340 2.07% 3397
chr13 1298419 1.14% 1679
chr14 2028558 1.90% 2486
chr15 2138911 2.10% 2684
chr16 2074431 2.30% 2532
chr17 3606095 4.33% 4047
chr17_GL000205v2_random 522 0.28% 1
chr18 906354 1.13% 1257
chr19 2522487 4.30% 2812
chr20 1656302 2.57% 1979
chr21 619220 1.33% 827
chr22 1639991 3.23% 1819
chrUn_GL000195v1 457 0.25% 1
chrUn_GL000219v1 2136 1.19% 2
chrX 375307 0.24% 620
3338 contigs with no values (185540027 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71629 195 16936 808.14 641
global segment-length histogram

Files

Filename Size md5
ENCFF724DKP.bed.gz 1.47 MB 6e6b09fae06e5f8f33cc51c24d30269a
ENCFF724DKP.tabix.bed.gz 736.83 KB 2c39dd2959a7ad1740dac60cff1544b9
ENCFF724DKP.tabix.bed.gz.tbi 240.71 KB b38e40222a07f2cd8b7d641d85950a8f
genomic_resource.yaml 1.51 KB c8ef8f9baba7676db9e54107c0ea54c9
statistics/