Resource

Id Histone_ChIP-seq/ENCSR848TLBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR848TLB [biosample_summary="Homo sapiens aorta tissue female adult (30 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR848TLB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000947/
  • biosample_summary: Homo sapiens aorta tissue female adult (30 years)
  • date_created: 2015-10-01T07:17:09.834934+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR848TLB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR848TLB float

Histone_ChIP-seq_ENCSR848TLB
Histone_ChIP-seq ENCSR848TLB [biosample_summary="Homo sapiens aorta tissue female adult (30 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR848TLB [1.5, 9.45]
n
15,796,446
mean
4.36
sd
0.911

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 157964460.49% 37876
chr1 1465688 0.59% 3400
chr2 1455345 0.60% 3486
chr3 1644125 0.83% 3908
chr4 974176 0.51% 2409
chr5 1132290 0.62% 2715
chr6 1111826 0.65% 2662
chr7 728141 0.46% 1764
chr8 746628 0.51% 1841
chr9 706835 0.51% 1669
chr10 985871 0.74% 2364
chr11 795669 0.59% 1840
chr12 793738 0.60% 1958
chr13 419330 0.37% 1060
chr14 484417 0.45% 1167
chr15 553896 0.54% 1299
chr16 300547 0.33% 721
chr17 390301 0.47% 894
chr18 292325 0.36% 725
chr19 104987 0.18% 262
chr20 294694 0.46% 681
chr21 146448 0.31% 342
chr22 150491 0.30% 351
chrX 118678 0.08% 358
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37876 185 2509 417.06 367
global segment-length histogram

Files

Filename Size md5
ENCFF148VCZ.bed.gz 703.62 KB efdcf324d968cb672dee6946db5b4673
ENCFF148VCZ.tabix.bed.gz 361.92 KB 0e157b1601cf1ff24c4a40210a8efeea
ENCFF148VCZ.tabix.bed.gz.tbi 179.24 KB 1422fd80ea2f0ace9fbdc73491a579e1
genomic_resource.yaml 1.97 KB 623465d3e90284f1ec5d090f888a6d06
statistics/