Resource
| Id | Histone_ChIP-seq/ENCSR847UJW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR847UJW [biosample_summary="Homo sapiens KMS-11" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN853XUT|/analyses/ENCAN853XUT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF243CKP|/files/ENCFF243CKP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 25344024 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF503KCQ|/files/ENCFF503KCQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 35423885 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR847UJW | float |
Histone_ChIP-seq_ENCSR847UJW |
Histone_ChIP-seq ENCSR847UJW [biosample_summary="Homo sapiens KMS-11" and target="H3K79me2"]
|
 |
[1.57, 14] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 76034477 | 2.36% | 36315 |
| chr1 | 7187568 | 2.89% | 3497 |
| chr2 | 6015982 | 2.48% | 2899 |
| chr3 | 4609633 | 2.32% | 1966 |
| chr4 | 3339698 | 1.76% | 1619 |
| chr5 | 4222731 | 2.33% | 1875 |
| chr6 | 4302247 | 2.52% | 2050 |
| chr7 | 5547158 | 3.48% | 2504 |
| chr8 | 3421817 | 2.36% | 1672 |
| chr9 | 3067402 | 2.22% | 1493 |
| chr10 | 4066053 | 3.04% | 1953 |
| chr11 | 3167507 | 2.34% | 1554 |
| chr12 | 3813902 | 2.86% | 1797 |
| chr13 | 1193601 | 1.04% | 624 |
| chr14 | 1680932 | 1.57% | 857 |
| chr15 | 2761880 | 2.71% | 1351 |
| chr16 | 3098691 | 3.43% | 1449 |
| chr17 | 3844451 | 4.62% | 1910 |
| chr18 | 1900785 | 2.36% | 921 |
| chr19 | 2568668 | 4.38% | 1267 |
| chr20 | 2202075 | 3.42% | 976 |
| chr21 | 795720 | 1.70% | 389 |
| chr22 | 1629112 | 3.21% | 835 |
| chrX | 1596864 | 1.02% | 857 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 36315 | 265 | 141088 | 2093.75 | 1129 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF718RUU.bed.gz | 870.89 KB | dc6eec4806ece38d4b0aa10836044fe4 |
| ENCFF718RUU.tabix.bed.gz | 393.36 KB | 3bf82b098c24a73fd4643cf768c5e98e |
| ENCFF718RUU.tabix.bed.gz.tbi | 94.56 KB | 701fa1de9b32dc36b2022287186d2ec4 |
| genomic_resource.yaml | 2.36 KB | 72992b7b5f5d07acf8e6f69a07a05435 |
| statistics/ |