Resource

Id Histone_ChIP-seq/ENCSR839PUYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR839PUY [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR839PUY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-10-01T07:16:13.669640+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR839PUY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR839PUY float

Histone_ChIP-seq_ENCSR839PUY
Histone_ChIP-seq ENCSR839PUY [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR839PUY [1.67, 36.3]
n
33,722,947
mean
10.5
sd
5.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 337229471.05% 57416
chr1 3536563 1.42% 6130
chr2 2196705 0.91% 3770
chr3 1907714 0.96% 3181
chr4 1251262 0.66% 2032
chr5 1627275 0.90% 2776
chr6 1954099 1.14% 3263
chr7 1473162 0.92% 2567
chr8 1286083 0.89% 2244
chr9 1352666 0.98% 2313
chr10 1420084 1.06% 2488
chr11 1928630 1.43% 3267
chr12 1787682 1.34% 2972
chr13 618761 0.54% 1074
chr14 1176481 1.10% 1949
chr15 1065322 1.04% 1829
chr16 1333141 1.48% 2248
chr17 2087553 2.51% 3514
chr18 622801 0.77% 1088
chr19 2090437 3.57% 3461
chr20 952083 1.48% 1632
chr21 328946 0.70% 544
chr22 812695 1.60% 1491
chrX 875332 0.56% 1529
chrY 37470 0.07% 54
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57416 135 11807 587.34 394
global segment-length histogram

Files

Filename Size md5
ENCFF559YNE.bed.gz 1.3 MB 9e3e6c83fa326ca6bd108ed5a0e75ee3
ENCFF559YNE.tabix.bed.gz 616.33 KB 4b5b36f4e4f5292bb1727688e9e1ba7e
ENCFF559YNE.tabix.bed.gz.tbi 194.85 KB 767ceb2823368ef56cb7f0c4bd2e9ea3
genomic_resource.yaml 1.46 KB 70cab99276b38dc8d6271484a2cc54b7
statistics/