Resource
| Id | Histone_ChIP-seq/ENCSR839GXY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR839GXY [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN915NQS|/analyses/ENCAN915NQS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF780SVP|/files/ENCFF780SVP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF780SVP|/files/ENCFF780SVP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR839GXY | float |
Histone_ChIP-seq_ENCSR839GXY |
Histone_ChIP-seq ENCSR839GXY [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K27ac"]
|
 |
[1.81, 68.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 128601248 | 4.00% | 79334 |
| chr1 | 12674862 | 5.09% | 7505 |
| chr2 | 9868664 | 4.07% | 6271 |
| chr3 | 9050881 | 4.56% | 5434 |
| chr4 | 5515369 | 2.90% | 3614 |
| chr5 | 7102454 | 3.91% | 4396 |
| chr6 | 7221611 | 4.23% | 4604 |
| chr7 | 5725820 | 3.59% | 3726 |
| chr8 | 5549167 | 3.82% | 3660 |
| chr9 | 5521263 | 3.99% | 3436 |
| chr10 | 7004559 | 5.24% | 4221 |
| chr11 | 6579506 | 4.87% | 4032 |
| chr12 | 6829869 | 5.12% | 4022 |
| chr13 | 3233325 | 2.83% | 2059 |
| chr14 | 4123115 | 3.85% | 2534 |
| chr15 | 4559935 | 4.47% | 2850 |
| chr16 | 4129287 | 4.57% | 2568 |
| chr17 | 6392830 | 7.68% | 3624 |
| chr18 | 2575239 | 3.20% | 1705 |
| chr19 | 4664959 | 7.96% | 2719 |
| chr20 | 3475598 | 5.39% | 2064 |
| chr21 | 1374108 | 2.94% | 950 |
| chr22 | 3013884 | 5.93% | 1752 |
| chrX | 2347557 | 1.50% | 1547 |
| chrY | 67386 | 0.12% | 41 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 79334 | 225 | 36105 | 1621.01 | 1127 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF521HKS.bed.gz | 1.95 MB | 6c358d366c7ccb0955799bd8dc41a75a |
| ENCFF521HKS.tabix.bed.gz | 875.61 KB | 977d8db193954a29c23fe6087ca7c448 |
| ENCFF521HKS.tabix.bed.gz.tbi | 252.47 KB | b309c850b0c63e2b6988d4cf381845aa |
| genomic_resource.yaml | 2.79 KB | b79e8c580cc69c860aa2380915cb1eb2 |
| statistics/ |