Resource
| Id | Histone_ChIP-seq/ENCSR836GCA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR836GCA [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN159MRS|/analyses/ENCAN159MRS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF307LPT|/files/ENCFF307LPT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 26387429 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR836GCA | float |
Histone_ChIP-seq_ENCSR836GCA |
Histone_ChIP-seq ENCSR836GCA [biosample_summary="Homo sapiens skeletal muscle tissue tissue" and target="H3K36me3"]
|
 |
[1.79, 20.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 93254339 | 2.90% | 158068 |
| chr1 | 9676959 | 3.89% | 15564 |
| chr2 | 7428701 | 3.07% | 12882 |
| chr3 | 5875191 | 2.96% | 10290 |
| chr4 | 3393095 | 1.78% | 6558 |
| chr5 | 4419683 | 2.43% | 7935 |
| chr6 | 4291359 | 2.51% | 7630 |
| chr7 | 4009736 | 2.52% | 7158 |
| chr8 | 3008347 | 2.07% | 5618 |
| chr9 | 4105083 | 2.97% | 6703 |
| chr10 | 4256227 | 3.18% | 7483 |
| chr11 | 4796428 | 3.55% | 7562 |
| chr12 | 5234465 | 3.93% | 8402 |
| chr13 | 1835276 | 1.60% | 3593 |
| chr14 | 3240081 | 3.03% | 5561 |
| chr15 | 3562505 | 3.49% | 6115 |
| chr16 | 4132950 | 4.57% | 6533 |
| chr17 | 5365698 | 6.44% | 8452 |
| chr18 | 1501034 | 1.87% | 2908 |
| chr19 | 5453319 | 9.30% | 8194 |
| chr20 | 2789351 | 4.33% | 4402 |
| chr21 | 1057680 | 2.26% | 1763 |
| chr22 | 2535988 | 4.99% | 3900 |
| chrX | 1232787 | 0.79% | 2724 |
| chrY | 52396 | 0.09% | 138 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 158068 | 135 | 21734 | 589.96 | 423 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF240YBY.bed.gz | 2.99 MB | 574d9de6dd2926f6b71370ada680114e |
| ENCFF240YBY.tabix.bed.gz | 1.47 MB | 9eb10c1f1d5cd353668e1c7913acffea |
| ENCFF240YBY.tabix.bed.gz.tbi | 195.34 KB | 861a626d1de29d635b9da5e7038af7a5 |
| genomic_resource.yaml | 1.96 KB | 32735fc588f22e7562069bec999eee2c |
| statistics/ |