Resource

Id Histone_ChIP-seq/ENCSR835MMNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR835MMN [biosample_summary="Homo sapiens SK-N-MC" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR835MMN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002860/
  • biosample_summary: Homo sapiens SK-N-MC
  • date_created: 2015-12-22T18:08:05.316150+00:00
  • date_released: 2016-11-18
  • doi: 10.17989/ENCSR835MMN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR835MMN float

Histone_ChIP-seq_ENCSR835MMN
Histone_ChIP-seq ENCSR835MMN [biosample_summary="Homo sapiens SK-N-MC" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR835MMN [1.56, 79.2]
n
79,614,634
mean
9.44
sd
8.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 796146342.47% 94659
chr1 7517990 3.02% 8957
chr2 6826308 2.82% 8116
chr3 5140226 2.59% 5944
chr4 4526733 2.38% 5360
chr5 4321621 2.38% 5177
chr6 5998795 3.51% 6865
chr7 4219980 2.65% 4979
chr8 5351966 3.69% 5927
chr9 3450866 2.49% 4102
chr10 2142786 1.60% 2589
chr11 3799765 2.81% 4520
chr12 4364455 3.27% 5298
chr13 2757224 2.41% 3082
chr14 3332563 3.11% 3872
chr15 2035179 2.00% 2522
chr16 1580897 1.75% 2055
chr17 3077311 3.70% 3980
chr18 1415100 1.76% 1629
chr19 2142360 3.65% 2897
chr20 1933392 3.00% 2311
chr21 945545 2.02% 1093
chr22 1177527 2.32% 1481
chrUn_GL000195v1 1477 0.81% 2
chrUn_KI270744v1 3679 2.18% 4
chrX 1550889 0.99% 1897
3341 contigs with no values (185953132 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94659 180 23800 841.07 569
global segment-length histogram

Files

Filename Size md5
ENCFF490ICV.bed.gz 2.17 MB a62a366bde2cf2f1c567b568565f2e1d
ENCFF490ICV.tabix.bed.gz 1005.22 KB 64f2eb04dc45d080096e71c0ff78009f
ENCFF490ICV.tabix.bed.gz.tbi 291.18 KB 91199aa08272a912c0adf6489fadc506
genomic_resource.yaml 1.37 KB fe5eab3022394d07b152bb223d70a16f
statistics/