Resource
| Id | Histone_ChIP-seq/ENCSR834BXU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR834BXU [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (110 days) output_type: replicated peaks audit_internal_action: Released analysis {ENCAN751XXX|/analyses/ENCAN751XXX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN751XXX|/analyses/ENCAN751XXX/} has in progress subobject document {1053c46e-411e-4817-8e56-e4785db5ffdb|/documents/1053c46e-411e-4817-8e56-e4785db5ffdb/} audit_warning: Processed unfiltered alignments file {ENCFF729EJE|/files/ENCFF729EJE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 39844020 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF902SHR|/files/ENCFF902SHR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 36026458 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR834BXU | float |
Histone_ChIP-seq_ENCSR834BXU |
Histone_ChIP-seq ENCSR834BXU [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K9me3"]
|
 |
[1.89, 21.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38718312 | 1.20% | 95804 |
| chr1 | 2276472 | 0.91% | 5748 |
| chr2 | 2654550 | 1.10% | 6893 |
| chr3 | 2095598 | 1.06% | 5527 |
| chr4 | 2362666 | 1.24% | 6018 |
| chr5 | 2379340 | 1.31% | 6077 |
| chr6 | 2056526 | 1.20% | 5442 |
| chr7 | 2366293 | 1.49% | 5776 |
| chr8 | 2278277 | 1.57% | 5313 |
| chr9 | 1295150 | 0.94% | 3225 |
| chr10 | 1688102 | 1.26% | 4313 |
| chr11 | 1870088 | 1.38% | 4959 |
| chr12 | 2041243 | 1.53% | 4714 |
| chr13 | 1114304 | 0.97% | 2877 |
| chr14 | 1303592 | 1.22% | 3303 |
| chr15 | 1004597 | 0.98% | 2336 |
| chr16 | 1109217 | 1.23% | 2484 |
| chr17 | 833794 | 1.00% | 2040 |
| chr18 | 844492 | 1.05% | 2261 |
| chr19 | 3320813 | 5.67% | 6360 |
| chr20 | 724784 | 1.12% | 1844 |
| chr21 | 694436 | 1.49% | 1625 |
| chr22 | 446092 | 0.88% | 1058 |
| chrX | 1953079 | 1.25% | 5589 |
| chrY | 4807 | 0.01% | 22 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95804 | 153 | 11740 | 404.14 | 308 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF264JDI.bed.gz | 1.6 MB | e47257daa8d7b8a17dfbaab65f9288a0 |
| ENCFF264JDI.tabix.bed.gz | 879.09 KB | 411ce4ac89d8e907351f2dd462fb3360 |
| ENCFF264JDI.tabix.bed.gz.tbi | 324.24 KB | da34b37e9d124b3a5be893d05bcadc08 |
| genomic_resource.yaml | 2.7 KB | 491081079bcbba17d8c954f9ad65e9f6 |
| statistics/ |