Resource
| Id | Histone_ChIP-seq/ENCSR832LMT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR832LMT [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: embryo (16 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN090TNA|/analyses/ENCAN090TNA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF790PHH|/files/ENCFF790PHH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22172896 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR832LMT | float |
Histone_ChIP-seq_ENCSR832LMT |
Histone_ChIP-seq ENCSR832LMT [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K36me3"]
|
 |
[1.88, 16.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 115793634 | 3.60% | 81481 |
| chr1 | 11428764 | 4.59% | 7852 |
| chr2 | 8376846 | 3.46% | 6483 |
| chr3 | 6890697 | 3.47% | 5207 |
| chr4 | 4174612 | 2.19% | 3362 |
| chr5 | 5811430 | 3.20% | 4178 |
| chr6 | 4790959 | 2.80% | 3694 |
| chr7 | 5393896 | 3.39% | 3959 |
| chr8 | 3731686 | 2.57% | 3044 |
| chr9 | 5179181 | 3.74% | 3511 |
| chr10 | 5198680 | 3.89% | 3818 |
| chr11 | 6017270 | 4.45% | 3987 |
| chr12 | 6441254 | 4.83% | 4230 |
| chr13 | 2303802 | 2.01% | 1986 |
| chr14 | 4209606 | 3.93% | 3012 |
| chr15 | 4251738 | 4.17% | 3186 |
| chr16 | 5581542 | 6.18% | 3437 |
| chr17 | 7059657 | 8.48% | 4301 |
| chr18 | 1678135 | 2.09% | 1432 |
| chr19 | 7489612 | 12.78% | 4279 |
| chr20 | 3647398 | 5.66% | 2351 |
| chr21 | 1477103 | 3.16% | 1000 |
| chr22 | 3256042 | 6.41% | 1869 |
| chrX | 1380593 | 0.88% | 1274 |
| chrY | 23131 | 0.04% | 29 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 81481 | 225 | 44205 | 1421.11 | 888 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF405UEW.bed.gz | 1.67 MB | 1a23e4e1e70ae11f31b0153f183e4dae |
| ENCFF405UEW.tabix.bed.gz | 829.4 KB | d5b79015ee47a941f3de5274d5179b8e |
| ENCFF405UEW.tabix.bed.gz.tbi | 137.91 KB | 51897d8e63c6acf7840ad32070dc36e8 |
| genomic_resource.yaml | 1.96 KB | 81f1186f8d1515aac00b97c3312e2705 |
| statistics/ |