Resource

Id Histone_ChIP-seq/ENCSR828CCQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR828CCQ [biosample_summary="Homo sapiens ovary tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR828CCQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (53 years)
  • date_created: 2017-07-28T10:07:45.722229+00:00
  • date_released: 2017-08-28
  • doi: 10.17989/ENCSR828CCQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR828CCQ float

Histone_ChIP-seq_ENCSR828CCQ
Histone_ChIP-seq ENCSR828CCQ [biosample_summary="Homo sapiens ovary tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR828CCQ [1.31, 41.1]
n
34,172,360
mean
17
sd
8.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 341723601.06% 23464
chr1 3374798 1.36% 2324
chr2 2368679 0.98% 1557
chr3 1994760 1.01% 1320
chr4 1418213 0.75% 924
chr5 1591277 0.88% 1036
chr6 1993869 1.17% 1308
chr7 1686112 1.06% 1168
chr8 1245654 0.86% 862
chr9 1417249 1.02% 993
chr10 1461118 1.09% 985
chr11 1866493 1.38% 1210
chr12 1856774 1.39% 1220
chr13 679161 0.59% 457
chr14 1119425 1.05% 751
chr15 1135923 1.11% 791
chr16 1283004 1.42% 929
chr17 1928586 2.32% 1390
chr18 585777 0.73% 413
chr19 2137528 3.65% 1632
chr20 831870 1.29% 581
chr21 350418 0.75% 245
chr22 751624 1.48% 542
chrM 2179 13.15% 3
chrX 1087094 0.70% 814
chrY 4775 0.01% 9
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23464 180 18019 1456.37 1283
global segment-length histogram

Files

Filename Size md5
ENCFF909APK.bed.gz 641.55 KB 3318c14109be337b7d33520dd7bde580
ENCFF909APK.tabix.bed.gz 273.47 KB 729dcc783d2b87c225fe08136ad7c497
ENCFF909APK.tabix.bed.gz.tbi 147.91 KB 05b4c095ae7793533284b79ba10247da
genomic_resource.yaml 1.49 KB 8167e7ade2a50b114943d82175c18635
statistics/