Resource
| Id | Histone_ChIP-seq/ENCSR827NKO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR827NKO [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN596WTR|/analyses/ENCAN596WTR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF033XVW|/files/ENCFF033XVW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 37641582 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR827NKO | float |
Histone_ChIP-seq_ENCSR827NKO |
Histone_ChIP-seq ENCSR827NKO [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)" and target="H3K4me1"]
|
 |
[1.22, 14.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 145891759 | 4.53% | 140672 |
| chr1 | 14942681 | 6.00% | 13803 |
| chr2 | 11581754 | 4.78% | 11562 |
| chr3 | 9233067 | 4.66% | 9345 |
| chr4 | 6483302 | 3.41% | 6902 |
| chr5 | 7583209 | 4.18% | 7542 |
| chr6 | 8269479 | 4.84% | 8455 |
| chr7 | 7464853 | 4.68% | 7485 |
| chr8 | 6446450 | 4.44% | 6368 |
| chr9 | 6565898 | 4.74% | 5953 |
| chr10 | 7377115 | 5.51% | 7232 |
| chr11 | 7707194 | 5.71% | 7096 |
| chr12 | 7107767 | 5.33% | 7011 |
| chr13 | 3504426 | 3.06% | 3632 |
| chr14 | 5240887 | 4.90% | 4813 |
| chr15 | 5209872 | 5.11% | 4914 |
| chr16 | 5333206 | 5.90% | 4668 |
| chr17 | 7260381 | 8.72% | 6116 |
| chr18 | 2873865 | 3.58% | 2927 |
| chr19 | 5522052 | 9.42% | 4761 |
| chr20 | 3931663 | 6.10% | 3619 |
| chr21 | 1604344 | 3.43% | 1645 |
| chr22 | 3217237 | 6.33% | 2691 |
| chrX | 1388052 | 0.89% | 2051 |
| chrY | 43005 | 0.08% | 81 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 140672 | 240 | 26077 | 1037.11 | 718 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF379TWQ.bed.gz | 3.19 MB | 2ddbcba873cbf0fa56440eec22ab7551 |
| ENCFF379TWQ.tabix.bed.gz | 1.46 MB | 5da2e3959be6fbb06dc9d747020d3a3c |
| ENCFF379TWQ.tabix.bed.gz.tbi | 354.7 KB | 90d981bb8fbec246813e611ab35d30f5 |
| genomic_resource.yaml | 1.99 KB | 66832d6be6a4d5f44d53a9c036ca5b42 |
| statistics/ |