Resource
| Id | Histone_ChIP-seq/ENCSR826ZCF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR826ZCF [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN691IKV|/analyses/ENCAN691IKV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF850GUT|/files/ENCFF850GUT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 23175745 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR826ZCF | float |
Histone_ChIP-seq_ENCSR826ZCF |
Histone_ChIP-seq ENCSR826ZCF [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (61 years)" and target="H3K4me1"]
|
 |
[1.88, 24.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 70596138 | 2.19% | 111509 |
| chr1 | 7506525 | 3.02% | 11310 |
| chr2 | 5384312 | 2.22% | 8802 |
| chr3 | 4242195 | 2.14% | 6918 |
| chr4 | 2826450 | 1.49% | 4895 |
| chr5 | 3386458 | 1.87% | 5495 |
| chr6 | 3873196 | 2.27% | 6450 |
| chr7 | 3076274 | 1.93% | 5257 |
| chr8 | 2656283 | 1.83% | 4358 |
| chr9 | 3269733 | 2.36% | 5039 |
| chr10 | 3428021 | 2.56% | 5418 |
| chr11 | 4131376 | 3.06% | 6103 |
| chr12 | 3479427 | 2.61% | 5434 |
| chr13 | 1365620 | 1.19% | 2351 |
| chr14 | 2533363 | 2.37% | 3865 |
| chr15 | 2689582 | 2.64% | 4090 |
| chr16 | 2844467 | 3.15% | 4320 |
| chr17 | 4244476 | 5.10% | 6279 |
| chr18 | 1295844 | 1.61% | 2151 |
| chr19 | 2874294 | 4.90% | 4375 |
| chr20 | 2109015 | 3.27% | 3181 |
| chr21 | 856578 | 1.83% | 1342 |
| chr22 | 1811349 | 3.56% | 2560 |
| chrX | 711300 | 0.46% | 1516 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 111509 | 160 | 12954 | 633.1 | 481 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF750OFC.bed.gz | 2.28 MB | ebb565bd3e2eb4484bdc771f6a4a4bc1 |
| ENCFF750OFC.tabix.bed.gz | 1.09 MB | e78f4264c6a75e6c1233bd43496c732c |
| ENCFF750OFC.tabix.bed.gz.tbi | 291.09 KB | b2586147c80196b605a9817999b054fd |
| genomic_resource.yaml | 2.02 KB | 4ca54de75bc4eacdc939e6c650d53ada |
| statistics/ |