Resource
| Id | Histone_ChIP-seq/ENCSR823QYQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR823QYQ [biosample_summary="Homo sapiens skeletal muscle tissue tissue female adult (72 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (72 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN348WVP|/analyses/ENCAN348WVP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF913WUS|/files/ENCFF913WUS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27424754 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR823QYQ | float |
Histone_ChIP-seq_ENCSR823QYQ |
Histone_ChIP-seq ENCSR823QYQ [biosample_summary="Homo sapiens skeletal muscle tissue tissue female adult (72 years)" and target="H3K4me1"]
|
 |
[1.7, 35] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 114243296 | 3.55% | 136486 |
| chr1 | 11981113 | 4.81% | 13708 |
| chr2 | 9048697 | 3.74% | 10987 |
| chr3 | 7760416 | 3.91% | 9555 |
| chr4 | 3797162 | 2.00% | 5144 |
| chr5 | 5669414 | 3.12% | 7105 |
| chr6 | 5976393 | 3.50% | 7953 |
| chr7 | 5014447 | 3.15% | 6399 |
| chr8 | 4457567 | 3.07% | 5638 |
| chr9 | 5308599 | 3.84% | 6040 |
| chr10 | 6472572 | 4.84% | 7495 |
| chr11 | 6518760 | 4.83% | 7399 |
| chr12 | 4973680 | 3.73% | 5971 |
| chr13 | 2109787 | 1.84% | 2876 |
| chr14 | 3833325 | 3.58% | 4492 |
| chr15 | 4232601 | 4.15% | 4997 |
| chr16 | 4658707 | 5.16% | 5247 |
| chr17 | 6555948 | 7.87% | 6970 |
| chr17_GL000205v2_random | 2074 | 1.12% | 2 |
| chr18 | 2165465 | 2.69% | 2845 |
| chr19 | 4356760 | 7.43% | 4671 |
| chr20 | 3534217 | 5.48% | 4009 |
| chr21 | 1132405 | 2.42% | 1456 |
| chr22 | 3293973 | 6.48% | 3452 |
| chrX | 1389214 | 0.89% | 2075 |
| 3342 contigs with no values (186118909 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 136486 | 190 | 24230 | 837.03 | 614 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF931PQN.bed.gz | 2.91 MB | 453ec0bfeae731516c7e6664027fede8 |
| ENCFF931PQN.tabix.bed.gz | 1.36 MB | 8bbf5075d66e967b343f7b4a1fb5850d |
| ENCFF931PQN.tabix.bed.gz.tbi | 299.42 KB | 5c4403d2e08ddf962f02ac4376c37b28 |
| genomic_resource.yaml | 2.04 KB | fd629982ff608ed50323f3d5ab2bf6c9 |
| statistics/ |