Resource
| Id | Histone_ChIP-seq/ENCSR814TSD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR814TSD [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN950RES|/analyses/ENCAN950RES/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN950RES|/analyses/ENCAN950RES/} has in progress subobject document {0e86a7a3-6a67-4d37-ad88-c65aaa672614|/documents/0e86a7a3-6a67-4d37-ad88-c65aaa672614/} audit_not_compliant: Processed alignments file {ENCFF092XKL|/files/ENCFF092XKL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28135271 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR814TSD | float |
Histone_ChIP-seq_ENCSR814TSD |
Histone_ChIP-seq ENCSR814TSD [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K4me1"]
|
 |
[1.78, 23.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 100517111 | 3.12% | 136428 |
| chr1 | 9178651 | 3.69% | 12111 |
| chr2 | 8704369 | 3.59% | 11611 |
| chr3 | 6736273 | 3.40% | 9330 |
| chr4 | 5165224 | 2.72% | 7428 |
| chr5 | 6490221 | 3.58% | 8637 |
| chr6 | 6250137 | 3.66% | 8553 |
| chr7 | 5293281 | 3.32% | 7365 |
| chr8 | 4588591 | 3.16% | 6429 |
| chr9 | 4410992 | 3.19% | 5789 |
| chr10 | 4575967 | 3.42% | 6117 |
| chr11 | 5293536 | 3.92% | 6784 |
| chr12 | 4970261 | 3.73% | 6684 |
| chr13 | 3246183 | 2.84% | 4584 |
| chr14 | 3161340 | 2.95% | 4228 |
| chr15 | 3155080 | 3.09% | 4184 |
| chr16 | 3251079 | 3.60% | 4224 |
| chr17 | 4063644 | 4.88% | 5242 |
| chr18 | 2579747 | 3.21% | 3645 |
| chr19 | 2362847 | 4.03% | 3433 |
| chr20 | 2507679 | 3.89% | 3273 |
| chr21 | 959363 | 2.05% | 1337 |
| chr22 | 1888391 | 3.72% | 2468 |
| chrX | 1684255 | 1.08% | 2972 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 136428 | 135 | 12598 | 736.78 | 543 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF972OMS.bed.gz | 2.99 MB | 0e29661ddeb37831a45092ad71baf78d |
| ENCFF972OMS.tabix.bed.gz | 1.38 MB | bbc1e0a3e50714a641c7c872c0f01908 |
| ENCFF972OMS.tabix.bed.gz.tbi | 419.91 KB | f82497183d4612c02b11e78a86ac0128 |
| genomic_resource.yaml | 2.18 KB | e8c51195c2c373862de7a9d2e83587c8 |
| statistics/ |