type: position_score
table:
  filename: ENCFF427YQG.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR807WEO
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR807WEO [TISSUE: Homo sapiens CD4-positive, alpha-beta memory
    T cell originated from blood cell, TARGET: H3K4me3]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_error**: Processed\
    \ redacted alignments file {ENCFF401LNB|/files/ENCFF401LNB/} processed by ChIP-seq\
    \ ENCODE3 GRCh38 pipeline has 4907286 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated\
    \ as a narrow histone mark is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/})\n\n**audit\\_internal\\_action**: Archived\
    \ analysis {ENCAN373APQ|/analyses/ENCAN373APQ/} has in progress subobject quality\
    \ standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}\n\n\
    **audit\\_not\\_compliant**: NRF (Non Redundant Fraction) is equal to the result\
    \ of the division of the number of reads after duplicates removal by the total\
    \ number of reads. An NRF value in the range 0 - 0.5 is poor complexity, 0.5 -\
    \ 0.8 is moderate complexity, and > 0.8 high complexity. NRF value > 0.8 is recommended,\
    \ but > 0.5 is acceptable. ENCODE processed redacted alignments file {ENCFF401LNB|/files/ENCFF401LNB/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with\
    \ NRF value of 0.32.\n\n**audit\\_not\\_compliant**: PBC1 (PCR Bottlenecking Coefficient\
    \ 1, M1/M\\_distinct) is the ratio of the number of genomic locations where exactly\
    \ one read maps uniquely (M1) to the number of genomic locations where some reads\
    \ map (M\\_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking,\
    \ 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and >\
    \ 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable.\
    \ ENCODE processed redacted alignments file {ENCFF401LNB|/files/ENCFF401LNB/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with\
    \ PBC1 value of 0.32.\n\n**audit\\_warning**: PBC2 (PCR Bottlenecking Coefficient\
    \ 2, M1/M2) is the ratio of the number of genomic locations where exactly one\
    \ read maps uniquely (M1) to the number of genomic locations where two reads map\
    \ uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 -\
    \ 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking.\
    \ PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted\
    \ alignments file {ENCFF401LNB|/files/ENCFF401LNB/} processed by ChIP-seq ENCODE3\
    \ GRCh38 pipeline was generated from a library with PBC2 value of 1.83."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR807WEO
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens CD4-positive, alpha-beta memory T cell originated
      from blood cell
    replication_type: unreplicated
    biosample_ontology: /biosample-types/primary_cell_CL_0000897/
    perturbed: false
    doi: 10.17989/ENCSR807WEO
    date_created: '2015-09-15T19:49:05.833646+00:00'
    date_released: '2013-07-31'
    submitter_comment: ''
    target: H3K4me3