Resource
| Id | Histone_ChIP-seq/ENCSR807LJO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR807LJO [biosample_summary="Homo sapiens ectodermal cell originated from HUES64" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN658DCR|/analyses/ENCAN658DCR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF471AJS|/files/ENCFF471AJS/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 5289277 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed redacted alignments file {ENCFF390MFF|/files/ENCFF390MFF/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 11529074 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR807LJO | float |
Histone_ChIP-seq_ENCSR807LJO |
Histone_ChIP-seq ENCSR807LJO [biosample_summary="Homo sapiens ectodermal cell originated from HUES64" and target="H3K4me3"]
|
 |
[2.09, 106] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36669387 | 1.14% | 24414 |
| chr1 | 3623818 | 1.46% | 2474 |
| chr2 | 2506499 | 1.03% | 1606 |
| chr3 | 2023310 | 1.02% | 1291 |
| chr4 | 1477737 | 0.78% | 894 |
| chr5 | 1762071 | 0.97% | 1150 |
| chr6 | 2197788 | 1.29% | 1363 |
| chr7 | 1741001 | 1.09% | 1175 |
| chr8 | 1369627 | 0.94% | 858 |
| chr9 | 1501585 | 1.09% | 1038 |
| chr10 | 1538722 | 1.15% | 1026 |
| chr11 | 1973685 | 1.46% | 1314 |
| chr12 | 1893879 | 1.42% | 1185 |
| chr13 | 778923 | 0.68% | 469 |
| chr14 | 1227420 | 1.15% | 783 |
| chr15 | 1210637 | 1.19% | 813 |
| chr16 | 1416153 | 1.57% | 961 |
| chr17 | 2105119 | 2.53% | 1439 |
| chr18 | 639223 | 0.80% | 407 |
| chr19 | 2345061 | 4.00% | 1768 |
| chr20 | 972251 | 1.51% | 700 |
| chr21 | 315140 | 0.67% | 222 |
| chr22 | 762894 | 1.50% | 583 |
| chrX | 1236403 | 0.79% | 868 |
| chrY | 50441 | 0.09% | 27 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24414 | 208 | 13824 | 1501.98 | 1315 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF753EZB.bed.gz | 631.52 KB | 733e1dd0cfae2d125d21d898023d2fe3 |
| ENCFF753EZB.tabix.bed.gz | 278.92 KB | c9b886ac4aba61e588d81353c0da5dd7 |
| ENCFF753EZB.tabix.bed.gz.tbi | 146.55 KB | 147e52758e9f550013763afa8903f735 |
| genomic_resource.yaml | 2.49 KB | 913bc998c15ee757fdae77b20558b798 |
| statistics/ |