Resource
| Id | Histone_ChIP-seq/ENCSR804FSU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR804FSU [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (28 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN449SAK|/analyses/ENCAN449SAK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF814SJU|/files/ENCFF814SJU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 12996790 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF814SJU|/files/ENCFF814SJU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF814SJU|/files/ENCFF814SJU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR804FSU | float |
Histone_ChIP-seq_ENCSR804FSU |
Histone_ChIP-seq ENCSR804FSU [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K9ac"]
|
 |
[2.04, 41.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 30650868 | 0.95% | 44933 |
| chr1 | 3210205 | 1.29% | 4774 |
| chr2 | 2341132 | 0.97% | 3619 |
| chr3 | 1853089 | 0.93% | 2814 |
| chr4 | 1274398 | 0.67% | 2037 |
| chr5 | 1566501 | 0.86% | 2402 |
| chr6 | 1823638 | 1.07% | 2710 |
| chr7 | 1449372 | 0.91% | 2187 |
| chr8 | 1100720 | 0.76% | 1641 |
| chr9 | 1181095 | 0.85% | 1763 |
| chr10 | 1333528 | 1.00% | 1989 |
| chr11 | 1663906 | 1.23% | 2324 |
| chr12 | 1680475 | 1.26% | 2493 |
| chr13 | 735836 | 0.64% | 1125 |
| chr14 | 1113462 | 1.04% | 1587 |
| chr15 | 971452 | 0.95% | 1480 |
| chr16 | 1090925 | 1.21% | 1392 |
| chr17 | 1738723 | 2.09% | 2302 |
| chr18 | 524340 | 0.65% | 822 |
| chr19 | 1479328 | 2.52% | 1931 |
| chr20 | 747774 | 1.16% | 1015 |
| chr21 | 311293 | 0.67% | 425 |
| chr22 | 638075 | 1.26% | 810 |
| chrX | 788928 | 0.51% | 1237 |
| chrY | 32673 | 0.06% | 54 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 44933 | 170 | 10107 | 682.15 | 455 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF472YRF.bed.gz | 1.01 MB | 2f83d5d3db04ebd7a20b424378831110 |
| ENCFF472YRF.tabix.bed.gz | 470.44 KB | 149ca0b5d8eee2741818893e370b6eb9 |
| ENCFF472YRF.tabix.bed.gz.tbi | 211.75 KB | 9d18c28fc596aeaa0cead9ba932bdc1e |
| genomic_resource.yaml | 3.32 KB | ac165ec0a8a47d78c848c60b2f2da50a |
| statistics/ |