Resource
| Id | Histone_ChIP-seq/ENCSR801FWU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR801FWU [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN764IVB|/analyses/ENCAN764IVB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF374UAV|/files/ENCFF374UAV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 41614769 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR801FWU | float |
Histone_ChIP-seq_ENCSR801FWU |
Histone_ChIP-seq ENCSR801FWU [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K36me3"]
|
 |
[1.77, 18.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 139401222 | 4.33% | 148167 |
| chr1 | 13645591 | 5.48% | 14415 |
| chr1_KI270709v1_random | 632 | 0.95% | 1 |
| chr1_KI270711v1_random | 1891 | 4.48% | 4 |
| chr1_KI270712v1_random | 705 | 0.40% | 2 |
| chr2 | 10073377 | 4.16% | 11990 |
| chr3 | 7787724 | 3.93% | 9313 |
| chr4 | 4719468 | 2.48% | 5925 |
| chr5 | 6369042 | 3.51% | 7592 |
| chr6 | 5785939 | 3.39% | 6749 |
| chr7 | 6237072 | 3.91% | 6962 |
| chr8 | 4734629 | 3.26% | 5601 |
| chr9 | 6074336 | 4.39% | 6258 |
| chr10 | 6017636 | 4.50% | 6833 |
| chr11 | 7406197 | 5.48% | 7319 |
| chr12 | 7809122 | 5.86% | 7909 |
| chr13 | 2893915 | 2.53% | 3818 |
| chr14 | 4616527 | 4.31% | 5164 |
| chr14_GL000194v1_random | 487 | 0.25% | 1 |
| chr14_GL000225v1_random | 287 | 0.14% | 1 |
| chr15 | 5582438 | 5.47% | 6211 |
| chr16 | 6881519 | 7.62% | 5963 |
| chr16_KI270728v1_random | 325 | 0.02% | 1 |
| chr17 | 8944607 | 10.74% | 8296 |
| chr17_GL000205v2_random | 1127 | 0.61% | 2 |
| chr17_KI270730v1_random | 282 | 0.25% | 1 |
| chr18 | 2364703 | 2.94% | 2987 |
| chr19 | 9630475 | 16.43% | 6985 |
| chr20 | 4165387 | 6.46% | 4084 |
| chr21 | 1576556 | 3.38% | 1661 |
| chr22 | 4300782 | 8.46% | 3623 |
| chr22_KI270733v1_random | 329 | 0.18% | 1 |
| chrUn_KI270442v1 | 2549 | 0.65% | 4 |
| chrUn_KI270744v1 | 861 | 0.51% | 2 |
| chrX | 1702396 | 1.09% | 2366 |
| chrY | 72309 | 0.13% | 123 |
| 3331 contigs with no values (125478124 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 148167 | 210 | 32635 | 940.84 | 577 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF198ZXO.bed.gz | 2.83 MB | 966e80cfa26d9fd77c05a54844f30e14 |
| ENCFF198ZXO.tabix.bed.gz | 1.42 MB | d9a4e096a223b200fafbd1c92c39f87a |
| ENCFF198ZXO.tabix.bed.gz.tbi | 185.89 KB | 2f3ad8793c3e15b2784f34d19a982af8 |
| genomic_resource.yaml | 1.95 KB | 76fa5860493b1dce1cdbf053f8b777ac |
| statistics/ |