Resource
| Id | Histone_ChIP-seq/ENCSR799TMR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR799TMR [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN779YFE|/analyses/ENCAN779YFE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF454MOJ|/files/ENCFF454MOJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15988449 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR799TMR | float |
Histone_ChIP-seq_ENCSR799TMR |
Histone_ChIP-seq ENCSR799TMR [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K4me3"]
|
 |
[1.76, 52.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49201488 | 1.53% | 45037 |
| chr1 | 4958083 | 1.99% | 4438 |
| chr2 | 3414001 | 1.41% | 3173 |
| chr3 | 2808695 | 1.42% | 2536 |
| chr4 | 2031953 | 1.07% | 1888 |
| chr5 | 2340431 | 1.29% | 2035 |
| chr6 | 2944306 | 1.72% | 2577 |
| chr7 | 2286222 | 1.43% | 2154 |
| chr8 | 1853429 | 1.28% | 1744 |
| chr9 | 2010487 | 1.45% | 1883 |
| chr10 | 2133817 | 1.59% | 2019 |
| chr11 | 2661843 | 1.97% | 2338 |
| chr12 | 2573012 | 1.93% | 2282 |
| chr13 | 1065886 | 0.93% | 1004 |
| chr14 | 1660624 | 1.55% | 1463 |
| chr15 | 1591195 | 1.56% | 1463 |
| chr16 | 1901581 | 2.10% | 1794 |
| chr17 | 2835526 | 3.41% | 2595 |
| chr18 | 878160 | 1.09% | 851 |
| chr19 | 3037272 | 5.18% | 2929 |
| chr20 | 1252287 | 1.94% | 1138 |
| chr21 | 540019 | 1.16% | 538 |
| chr22 | 1070989 | 2.11% | 994 |
| chrX | 1295224 | 0.83% | 1156 |
| chrY | 56446 | 0.10% | 45 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 45037 | 205 | 9829 | 1092.47 | 762 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF496UQF.bed.gz | 1.07 MB | d7b1fcd5eb701d7683bca990815b571c |
| ENCFF496UQF.tabix.bed.gz | 492.14 KB | 2ee37f1d24e8a35296c72a8291a8a36f |
| ENCFF496UQF.tabix.bed.gz.tbi | 202.78 KB | 63297404515723ae8c58ec4dd3b655d4 |
| genomic_resource.yaml | 2.0 KB | cd0f5e6e2d2fc5284220b3c4564f7faf |
| statistics/ |