Resource

Id Histone_ChIP-seq/ENCSR794ULTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR794ULT [biosample_summary="Homo sapiens HCT116" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR794ULT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2014-02-20T04:37:55.114990+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR794ULT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR794ULT float

Histone_ChIP-seq_ENCSR794ULT
Histone_ChIP-seq ENCSR794ULT [biosample_summary="Homo sapiens HCT116" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR794ULT [1.64, 51.8]
n
100,310,581
mean
17
sd
10.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1003105813.12% 67160
chr1 10017565 4.02% 6681
chr2 7251753 2.99% 5013
chr3 5922511 2.99% 4032
chr4 4597997 2.42% 3263
chr5 4707383 2.59% 3259
chr6 5960018 3.49% 4126
chr7 4999797 3.14% 3473
chr8 4217850 2.91% 2837
chr9 4053264 2.93% 2737
chr10 4917611 3.68% 3298
chr11 5159112 3.82% 3269
chr12 5534458 4.15% 3539
chr13 1913302 1.67% 1342
chr14 3075066 2.87% 2105
chr15 3101927 3.04% 2132
chr16 3793710 4.20% 2466
chr17 5699655 6.85% 3517
chr18 1764696 2.20% 1222
chr19 4970936 8.48% 2999
chr20 2853837 4.43% 1939
chr21 884414 1.89% 615
chr22 2357886 4.64% 1511
chrX 2516373 1.61% 1756
chrY 39460 0.07% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 67160 215 25186 1493.61 1084
global segment-length histogram

Files

Filename Size md5
ENCFF101KOJ.bed.gz 1.8 MB 0dcba826d6076832468d400d62f2da03
ENCFF101KOJ.tabix.bed.gz 766.38 KB c2b3731501cc28b55e55031e9bff69ef
ENCFF101KOJ.tabix.bed.gz.tbi 273.44 KB 67341311386b57b234fccfa0667f39c0
genomic_resource.yaml 1.59 KB cfb61072eeedc9acbafdfe2ef8e5054e
statistics/