Resource
| Id | Histone_ChIP-seq/ENCSR789RGI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR789RGI [biosample_summary="Homo sapiens B cell" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_error: Processed redacted alignments file {ENCFF073TRH|/files/ENCFF073TRH/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline has 2157326 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN336SGK|/analyses/ENCAN336SGK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF942VLW|/files/ENCFF942VLW/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline has 7575193 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR789RGI | float |
Histone_ChIP-seq_ENCSR789RGI |
Histone_ChIP-seq ENCSR789RGI [biosample_summary="Homo sapiens B cell" and target="H3K36me3"]
|
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[1.97, 8.02] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 20494758 | 0.64% | 73560 |
| chr1 | 2138169 | 0.86% | 7643 |
| chr2 | 1975176 | 0.82% | 7083 |
| chr3 | 1503766 | 0.76% | 5414 |
| chr4 | 1068681 | 0.56% | 3853 |
| chr5 | 1306331 | 0.72% | 4706 |
| chr6 | 1185491 | 0.69% | 4312 |
| chr7 | 972588 | 0.61% | 3592 |
| chr8 | 759731 | 0.52% | 2738 |
| chr9 | 683951 | 0.49% | 2310 |
| chr10 | 935312 | 0.70% | 3368 |
| chr11 | 978309 | 0.72% | 3480 |
| chr12 | 1173922 | 0.88% | 4214 |
| chr13 | 488623 | 0.43% | 1806 |
| chr14 | 767805 | 0.72% | 2747 |
| chr15 | 781684 | 0.77% | 2849 |
| chr16 | 696294 | 0.77% | 2492 |
| chr17 | 820749 | 0.99% | 2990 |
| chr18 | 414141 | 0.52% | 1506 |
| chr19 | 789944 | 1.35% | 2568 |
| chr20 | 466212 | 0.72% | 1665 |
| chr21 | 200560 | 0.43% | 724 |
| chr22 | 292388 | 0.58% | 1071 |
| chrX | 94931 | 0.06% | 429 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73560 | 130 | 2566 | 278.61 | 227 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF356KFK.bed.gz | 1.03 MB | 3faac6597bf1b4222d0b170e8bd5eb24 |
| ENCFF356KFK.tabix.bed.gz | 598.34 KB | 4c784b1ce785c824b0c9b8ddde021a12 |
| ENCFF356KFK.tabix.bed.gz.tbi | 169.29 KB | 5ba790d1cff409af3ff89a258a3c783b |
| genomic_resource.yaml | 2.47 KB | cec0473b299eab3ea356166cf85c3d2f |
| statistics/ |
