Resource
| Id | Histone_ChIP-seq/ENCSR788WNE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR788WNE [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN361WSA|/analyses/ENCAN361WSA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF899JGZ|/files/ENCFF899JGZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF899JGZ|/files/ENCFF899JGZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.50. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR788WNE | float |
Histone_ChIP-seq_ENCSR788WNE |
Histone_ChIP-seq ENCSR788WNE [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K4me3"]
|
 |
[1.9, 81.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54474516 | 1.69% | 31104 |
| chr1 | 5476020 | 2.20% | 3124 |
| chr2 | 3689339 | 1.52% | 2070 |
| chr3 | 3094417 | 1.56% | 1692 |
| chr4 | 2147022 | 1.13% | 1181 |
| chr5 | 2538113 | 1.40% | 1402 |
| chr6 | 3122382 | 1.83% | 1720 |
| chr7 | 2692505 | 1.69% | 1571 |
| chr8 | 2007427 | 1.38% | 1194 |
| chr9 | 2309979 | 1.67% | 1363 |
| chr10 | 2296203 | 1.72% | 1351 |
| chr11 | 2912398 | 2.16% | 1586 |
| chr12 | 2931309 | 2.20% | 1546 |
| chr13 | 1124209 | 0.98% | 670 |
| chr14 | 1727781 | 1.61% | 930 |
| chr15 | 1749021 | 1.71% | 1002 |
| chr16 | 2201759 | 2.44% | 1309 |
| chr17 | 3247658 | 3.90% | 1846 |
| chr18 | 903819 | 1.12% | 573 |
| chr19 | 3477256 | 5.93% | 2111 |
| chr20 | 1451744 | 2.25% | 849 |
| chr21 | 557554 | 1.19% | 330 |
| chr22 | 1247543 | 2.45% | 739 |
| chrX | 1512825 | 0.97% | 917 |
| chrY | 56233 | 0.10% | 28 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31104 | 235 | 20324 | 1751.37 | 1366 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF926KAB.bed.gz | 812.7 KB | 85daa7e21a2d5146967f90b662101bcd |
| ENCFF926KAB.tabix.bed.gz | 355.51 KB | 4c55fcfaccd0c9f92b48292ce13497a5 |
| ENCFF926KAB.tabix.bed.gz.tbi | 181.42 KB | 2d4b92771cac772a1d07981bd39c0050 |
| genomic_resource.yaml | 2.81 KB | b0434627f26f34852d83d41fcb3efd70 |
| statistics/ |