Resource

Id Histone_ChIP-seq/ENCSR787TQWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR787TQW [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR787TQW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (51 years)
  • date_created: 2018-10-31T03:11:35.168482+00:00
  • date_released: 2018-12-14
  • doi: 10.17989/ENCSR787TQW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR787TQW float

Histone_ChIP-seq_ENCSR787TQW
Histone_ChIP-seq ENCSR787TQW [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR787TQW [1.22, 14.2]
n
53,509,382
mean
3.82
sd
1.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 535093821.66% 59468
chr1 3001647 1.21% 3527
chr1_KI270706v1_random 602 0.34% 2
chr1_KI270709v1_random 10556 15.79% 14
chr1_KI270712v1_random 1904 1.08% 3
chr2 3057213 1.26% 3829
chr2_KI270716v1_random 3914 2.54% 4
chr3 2462069 1.24% 3109
chr4 2675492 1.41% 3295
chr4_GL000008v2_random 5059 2.41% 2
chr5 3435294 1.89% 3811
chr5_GL000208v1_random 7227 7.80% 11
chr6 2260484 1.32% 2878
chr7 3476167 2.18% 3665
chr8 2523784 1.74% 2981
chr9 1544923 1.12% 1852
chr9_KI270719v1_random 6930 3.92% 9
chr9_KI270720v1_random 1300 3.33% 2
chr10 2416206 1.81% 2565
chr11 2372003 1.76% 2599
chr12 2592569 1.95% 2650
chr13 1186579 1.04% 1552
chr14 1354198 1.27% 1675
chr14_GL000009v2_random 1148 0.57% 3
chr14_GL000194v1_random 2885 1.51% 2
chr14_GL000225v1_random 61650 29.19% 42
chr14_KI270723v1_random 3248 8.52% 5
chr14_KI270725v1_random 3078 1.78% 4
chr15 1206899 1.18% 1326
chr16 1680567 1.86% 1823
chr16_KI270728v1_random 1238 0.07% 3
chr17 937114 1.13% 1073
chr17_GL000205v2_random 27514 14.83% 11
chr17_KI270729v1_random 75535 26.90% 68
chr17_KI270730v1_random 22857 20.31% 13
chr18 931791 1.16% 1181
chr19 5094880 8.69% 3554
chr20 1075184 1.67% 1255
chr21 780420 1.67% 825
chr22 610909 1.20% 702
chr22_KI270732v1_random 5293 12.74% 6
chr22_KI270733v1_random 7485 4.16% 16
chr22_KI270735v1_random 11217 26.20% 12
chr22_KI270736v1_random 122392 67.28% 39
chr22_KI270737v1_random 309 0.30% 1
chr22_KI270738v1_random 24603 24.76% 24
chrUn_GL000214v1 1374 1.00% 3
chrUn_GL000216v2 2228 1.26% 5
chrUn_GL000218v1 1407 0.87% 3
chrUn_GL000219v1 18711 10.44% 16
chrUn_GL000220v1 395 0.24% 1
chrUn_GL000224v1 23095 12.85% 17
chrUn_KI270429v1 315 23.14% 1
chrUn_KI270435v1 8948 9.62% 8
chrUn_KI270438v1 44567 39.61% 42
chrUn_KI270442v1 144376 36.82% 99
chrUn_KI270448v1 1377 17.23% 2
chrUn_KI270465v1 440 24.80% 1
chrUn_KI270467v1 1352 34.49% 2
chrUn_KI270468v1 1564 38.57% 1
chrUn_KI270508v1 1070 54.84% 1
chrUn_KI270509v1 1396 60.22% 2
chrUn_KI270512v1 2859 12.60% 2
chrUn_KI270515v1 2323 36.52% 3
chrUn_KI270516v1 514 39.54% 1
chrUn_KI270517v1 1028 31.60% 1
chrUn_KI270519v1 19154 13.87% 25
chrUn_KI270522v1 1162 20.48% 1
chrUn_KI270538v1 7180 7.86% 9
chrUn_KI270583v1 1082 77.29% 1
chrUn_KI270588v1 761 12.36% 1
chrUn_KI270589v1 3558 8.00% 2
chrUn_KI270590v1 2302 49.14% 3
chrUn_KI270591v1 2052 35.40% 1
chrUn_KI270742v1 2692 1.44% 6
chrUn_KI270743v1 1270 0.60% 3
chrUn_KI270744v1 3813 2.26% 3
chrUn_KI270746v1 3114 4.68% 5
chrUn_KI270747v1 1251 0.63% 1
chrUn_KI270749v1 3211 2.02% 2
chrUn_KI270750v1 3888 2.61% 8
chrUn_KI270751v1 3797 2.52% 4
chrUn_KI270753v1 703 1.12% 1
chrUn_KI270754v1 1607 4.00% 4
chrUn_KI270756v1 3890 4.89% 3
chrUn_KI270757v1 10902 15.30% 8
chrX 6052937 3.88% 7113
chrY 35381 0.06% 30
3279 contigs with no values (120579032 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59468 225 43542 899.8 686
global segment-length histogram

Files

Filename Size md5
ENCFF352NKF.bed.gz 1.15 MB 2d8a7510c9b3feddc28e453db4081c18
ENCFF352NKF.tabix.bed.gz 600.67 KB c82d6a6f758f72a848f8edd6fb436ecc
ENCFF352NKF.tabix.bed.gz.tbi 264.83 KB 51617e674384d71f13a6e1362ab5c1ac
genomic_resource.yaml 1.5 KB bde39eec880f33ff346b74965983a056
statistics/