Resource

Id Histone_ChIP-seq/ENCSR785DJDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR785DJD [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR785DJD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue female adult (53 years)
  • date_created: 2017-01-24T04:39:18.424381+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR785DJD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR785DJD float

Histone_ChIP-seq_ENCSR785DJD
Histone_ChIP-seq ENCSR785DJD [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR785DJD [1.54, 75.2]
n
44,628,800
mean
26.3
sd
14.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 446288001.39% 29264
chr1 4474690 1.80% 2847
chr2 3137384 1.30% 2052
chr3 2637770 1.33% 1649
chr4 1867210 0.98% 1244
chr5 2122743 1.17% 1300
chr6 2705868 1.58% 1736
chr7 2184471 1.37% 1482
chr8 1702107 1.17% 1140
chr9 1851792 1.34% 1277
chr10 2063015 1.54% 1347
chr11 2374769 1.76% 1495
chr12 2383735 1.79% 1449
chr13 958048 0.84% 642
chr14 1392975 1.30% 881
chr15 1456714 1.43% 978
chr16 1661460 1.84% 1143
chr17 2481318 2.98% 1658
chr18 792850 0.99% 565
chr19 2526860 4.31% 1758
chr20 1105752 1.72% 755
chr21 476677 1.02% 331
chr22 949689 1.87% 664
chrM 10351 62.47% 4
chrX 1310190 0.84% 866
chrY 362 <0.01% 1
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29264 200 17928 1525.04 1184
global segment-length histogram

Files

Filename Size md5
ENCFF998HPC.bed.gz 796.89 KB 171a9a9bca6470dbe44596f2f5fefe86
ENCFF998HPC.tabix.bed.gz 338.87 KB ce7fe25e7d40361abbcfe566e6c2f74c
ENCFF998HPC.tabix.bed.gz.tbi 166.51 KB 21d4ae4f4f99e96d25101367254df726
genomic_resource.yaml 1.55 KB 0f2a772b197166649f3dec95acaecd22
statistics/