Resource
| Id | Histone_ChIP-seq/ENCSR782OZZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR782OZZ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN968QVQ|/analyses/ENCAN968QVQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN968QVQ|/analyses/ENCAN968QVQ/} has in progress subobject document {d307cec6-9575-413c-814a-ebaa00ef35a0|/documents/d307cec6-9575-413c-814a-ebaa00ef35a0/} audit_not_compliant: Processed alignments file {ENCFF589PTK|/files/ENCFF589PTK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20931858 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR782OZZ | float |
Histone_ChIP-seq_ENCSR782OZZ |
Histone_ChIP-seq ENCSR782OZZ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (34 years)" and target="H3K4me1"]
|
 |
[1.84, 14.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24076370 | 0.75% | 75222 |
| chr1 | 2505188 | 1.01% | 7691 |
| chr2 | 1782927 | 0.74% | 5825 |
| chr3 | 1286417 | 0.65% | 4305 |
| chr4 | 768977 | 0.40% | 2627 |
| chr5 | 1047965 | 0.58% | 3466 |
| chr6 | 1160967 | 0.68% | 3990 |
| chr7 | 1056379 | 0.66% | 3391 |
| chr8 | 902824 | 0.62% | 2907 |
| chr9 | 1224011 | 0.88% | 3665 |
| chr10 | 1221018 | 0.91% | 3786 |
| chr11 | 1440294 | 1.07% | 4282 |
| chr12 | 979628 | 0.74% | 3154 |
| chr13 | 456898 | 0.40% | 1522 |
| chr14 | 873013 | 0.82% | 2651 |
| chr15 | 897321 | 0.88% | 2826 |
| chr16 | 1161164 | 1.29% | 3392 |
| chr17 | 1633016 | 1.96% | 4640 |
| chr18 | 396846 | 0.49% | 1383 |
| chr19 | 1334676 | 2.28% | 3705 |
| chr20 | 763679 | 1.19% | 2374 |
| chr21 | 268549 | 0.57% | 901 |
| chr22 | 746689 | 1.47% | 2112 |
| chrX | 161591 | 0.10% | 603 |
| chrY | 6333 | 0.01% | 24 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75222 | 130 | 3098 | 320.07 | 263 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF556UDU.bed.gz | 1.45 MB | a102c1789d8465dfbe3cb2754a139caa |
| ENCFF556UDU.tabix.bed.gz | 735.7 KB | f6db6005b53da18fc6b964ff4a900360 |
| ENCFF556UDU.tabix.bed.gz.tbi | 255.1 KB | 0072285a989ca611d515570f0f6d36bc |
| genomic_resource.yaml | 2.21 KB | e8bf794bbe13ca6645cad8672cc75629 |
| statistics/ |