Resource
| Id | Histone_ChIP-seq/ENCSR780CNW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR780CNW [biosample_summary="Homo sapiens tibial artery tissue male adult (37 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN081RUZ|/analyses/ENCAN081RUZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF858RSO|/files/ENCFF858RSO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR780CNW | float |
Histone_ChIP-seq_ENCSR780CNW |
Histone_ChIP-seq ENCSR780CNW [biosample_summary="Homo sapiens tibial artery tissue male adult (37 years)" and target="H3K4me3"]
|
 |
[1.68, 87.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52041620 | 1.62% | 30963 |
| chr1 | 5165227 | 2.07% | 3010 |
| chr2 | 3599715 | 1.49% | 2186 |
| chr3 | 2974329 | 1.50% | 1729 |
| chr4 | 2172632 | 1.14% | 1286 |
| chr5 | 2474206 | 1.36% | 1494 |
| chr6 | 3003155 | 1.76% | 1771 |
| chr7 | 2531913 | 1.59% | 1555 |
| chr8 | 1978550 | 1.36% | 1241 |
| chr9 | 2185469 | 1.58% | 1320 |
| chr10 | 2335947 | 1.75% | 1498 |
| chr11 | 2816001 | 2.08% | 1562 |
| chr12 | 2826052 | 2.12% | 1590 |
| chr13 | 1112375 | 0.97% | 700 |
| chr14 | 1629253 | 1.52% | 932 |
| chr15 | 1675462 | 1.64% | 1010 |
| chr16 | 2028115 | 2.25% | 1223 |
| chr17 | 2848861 | 3.42% | 1665 |
| chr18 | 909979 | 1.13% | 567 |
| chr19 | 3031324 | 5.17% | 1773 |
| chr20 | 1334054 | 2.07% | 794 |
| chr21 | 567011 | 1.21% | 385 |
| chr22 | 1164179 | 2.29% | 709 |
| chrX | 1620103 | 1.04% | 934 |
| chrY | 57708 | 0.10% | 29 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30963 | 220 | 35705 | 1680.77 | 1288 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF318TGO.bed.gz | 869.99 KB | 0481228fb36d7ca85eff730e48c1eea3 |
| ENCFF318TGO.tabix.bed.gz | 362.5 KB | e4014b71d91be9d2664f46ed7f13bc19 |
| ENCFF318TGO.tabix.bed.gz.tbi | 188.36 KB | dd1bdc85d1a1c8312dc7aaa766eafad4 |
| genomic_resource.yaml | 2.14 KB | e7793a8312c5fa5a04e1b94ac1936a00 |
| statistics/ |