Resource
| Id | Histone_ChIP-seq/ENCSR776EAH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR776EAH [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN536ORR|/analyses/ENCAN536ORR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF107CVP|/files/ENCFF107CVP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF107CVP|/files/ENCFF107CVP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR776EAH | float |
Histone_ChIP-seq_ENCSR776EAH |
Histone_ChIP-seq ENCSR776EAH [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)" and target="H3K4me1"]
|
 |
[1.61, 12.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 123155957 | 3.83% | 107052 |
| chr1 | 12427705 | 4.99% | 10468 |
| chr1_KI270713v1_random | 620 | 1.52% | 1 |
| chr2 | 10162709 | 4.20% | 8894 |
| chr3 | 9295560 | 4.69% | 7953 |
| chr4 | 5031928 | 2.65% | 4535 |
| chr5 | 6595338 | 3.63% | 5701 |
| chr6 | 7755505 | 4.54% | 6892 |
| chr7 | 5993290 | 3.76% | 5426 |
| chr8 | 4946759 | 3.41% | 4443 |
| chr9 | 5251753 | 3.79% | 4523 |
| chr10 | 7037045 | 5.26% | 5884 |
| chr11 | 6150525 | 4.55% | 5263 |
| chr12 | 5657743 | 4.25% | 4952 |
| chr13 | 2727771 | 2.39% | 2478 |
| chr14 | 3973548 | 3.71% | 3469 |
| chr15 | 4526548 | 4.44% | 3879 |
| chr16 | 4435462 | 4.91% | 3774 |
| chr17 | 6210124 | 7.46% | 5123 |
| chr17_GL000205v2_random | 1491 | 0.80% | 1 |
| chr18 | 2529725 | 3.15% | 2300 |
| chr19 | 3837241 | 6.55% | 3251 |
| chr20 | 3286548 | 5.10% | 2827 |
| chr21 | 1169542 | 2.50% | 1053 |
| chr22 | 2952003 | 5.81% | 2474 |
| chrUn_GL000219v1 | 5162 | 2.88% | 9 |
| chrX | 1194312 | 0.77% | 1479 |
| 3340 contigs with no values (185898966 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107052 | 215 | 29066 | 1150.43 | 831 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF762MCN.bed.gz | 2.41 MB | 4696f1d30fd8b95f125d36ec8a106fad |
| ENCFF762MCN.tabix.bed.gz | 1.11 MB | e4ec396c043d9ae3af448ff05c201a5e |
| ENCFF762MCN.tabix.bed.gz.tbi | 258.25 KB | dc456d4418f4c8f51d3b841c1d3cb663 |
| genomic_resource.yaml | 2.8 KB | e9d8ebe47095d7bf62dce57368d41db4 |
| statistics/ |