Resource
| Id | Histone_ChIP-seq/ENCSR774OKQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR774OKQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (37 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN769HUN|/analyses/ENCAN769HUN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF425KVM|/files/ENCFF425KVM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 24427234 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR774OKQ | float |
Histone_ChIP-seq_ENCSR774OKQ |
Histone_ChIP-seq ENCSR774OKQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (37 years)" and target="H3K36me3"]
|
 |
[1.92, 20.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 98204761 | 3.05% | 255235 |
| chr1 | 9785857 | 3.93% | 24642 |
| chr2 | 7763771 | 3.21% | 20006 |
| chr3 | 6280561 | 3.17% | 16445 |
| chr4 | 3539522 | 1.86% | 9998 |
| chr5 | 5195708 | 2.86% | 12999 |
| chr6 | 4714059 | 2.76% | 12320 |
| chr7 | 4139778 | 2.60% | 11306 |
| chr8 | 3185781 | 2.19% | 8880 |
| chr9 | 4015384 | 2.90% | 10187 |
| chr10 | 4128956 | 3.09% | 11020 |
| chr11 | 5050688 | 3.74% | 12189 |
| chr12 | 5367527 | 4.03% | 13602 |
| chr13 | 2073198 | 1.81% | 5687 |
| chr14 | 3662692 | 3.42% | 9456 |
| chr15 | 3421348 | 3.35% | 9276 |
| chr16 | 4251379 | 4.71% | 11015 |
| chr17 | 5758806 | 6.92% | 14386 |
| chr18 | 1605586 | 2.00% | 4401 |
| chr19 | 4977524 | 8.49% | 12323 |
| chr20 | 3006309 | 4.66% | 7451 |
| chr21 | 1290869 | 2.76% | 3260 |
| chr22 | 2649040 | 5.21% | 6409 |
| chrX | 2176434 | 1.39% | 7364 |
| chrY | 163984 | 0.29% | 613 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 255235 | 80 | 14927 | 384.76 | 260 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF388QCN.bed.gz | 4.67 MB | 97eca16a2ba8015f884d0cad02365f77 |
| ENCFF388QCN.tabix.bed.gz | 2.29 MB | 0f1a27e59a3c5b11f23c22bf54783584 |
| ENCFF388QCN.tabix.bed.gz.tbi | 195.41 KB | 9be4a6f81d526b33a4d251dd110a7c15 |
| genomic_resource.yaml | 2.03 KB | 7554bf7da8c38fd074b9398bd0b24ad8 |
| statistics/ |