Resource
| Id | Histone_ChIP-seq/ENCSR774CFO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR774CFO [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN653SVL|/analyses/ENCAN653SVL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF276TZX|/files/ENCFF276TZX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF276TZX|/files/ENCFF276TZX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.76. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR774CFO | float |
Histone_ChIP-seq_ENCSR774CFO |
Histone_ChIP-seq ENCSR774CFO [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K27me3"]
|
 |
[1.25, 8.04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7837834 | 0.24% | 9561 |
| chr1 | 650160 | 0.26% | 789 |
| chr2 | 595243 | 0.25% | 655 |
| chr3 | 280255 | 0.14% | 360 |
| chr4 | 321993 | 0.17% | 412 |
| chr5 | 422707 | 0.23% | 484 |
| chr6 | 545010 | 0.32% | 634 |
| chr7 | 483601 | 0.30% | 528 |
| chr8 | 315715 | 0.22% | 427 |
| chr9 | 343239 | 0.25% | 417 |
| chr10 | 418683 | 0.31% | 483 |
| chr11 | 357158 | 0.26% | 451 |
| chr12 | 394532 | 0.30% | 506 |
| chr13 | 188882 | 0.17% | 220 |
| chr14 | 250035 | 0.23% | 288 |
| chr15 | 216496 | 0.21% | 259 |
| chr16 | 311436 | 0.34% | 421 |
| chr17 | 540518 | 0.65% | 610 |
| chr18 | 143051 | 0.18% | 198 |
| chr19 | 513989 | 0.88% | 658 |
| chr20 | 286483 | 0.44% | 400 |
| chr21 | 81188 | 0.17% | 106 |
| chr22 | 154455 | 0.30% | 216 |
| chrM | 5550 | 33.50% | 6 |
| chrX | 17195 | 0.01% | 32 |
| chrY | 260 | <0.01% | 1 |
| 3341 contigs with no values (129060516 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 9561 | 225 | 8566 | 819.77 | 615 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF946OTT.bed.gz | 193.88 KB | 16c8c07a0ff53db1a1a854602f7b04f1 |
| ENCFF946OTT.tabix.bed.gz | 99.02 KB | e427c10c3c3783ec076ab5cff148d78d |
| ENCFF946OTT.tabix.bed.gz.tbi | 57.17 KB | 8ab5b71af3f9e2548e36759b0441678b |
| genomic_resource.yaml | 2.77 KB | 5ff8d1715e9146f91041ab91ffb22e40 |
| statistics/ |